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ATP6AP1L ATPase H+ transporting accessory protein 1 like (pseudogene) [ Homo sapiens (human) ]

Gene ID: 92270, updated on 5-Jan-2022

Summary

Official Symbol
ATP6AP1Lprovided by HGNC
Official Full Name
ATPase H+ transporting accessory protein 1 like (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:28091
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be involved in regulation of cellular pH. Predicted to be integral component of membrane. Predicted to be part of plasma membrane proton-transporting V-type ATPase complex. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Broad expression in testis (RPKM 1.6), skin (RPKM 1.0) and 25 other tissues See more
Orthologs
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Genomic context

See ATP6AP1L in Genome Data Viewer
Location:
5q14.2
Exon count:
16
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (82278650..82318806)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (81574469..81614625)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene autophagy related 10 Neighboring gene RNA, 7SL, cytoplasmic 378, pseudogene Neighboring gene ribosomal protein S23 Neighboring gene uncharacterized LOC105379050 Neighboring gene ribosomal protein L5 pseudogene 16

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Other Names

  • ATPase, H+ transporting, lysosomal accessory protein 1-like
  • V-type proton ATPase subunit S1-like protein
  • vacuolar proton pump subunit S1-like protein

Clone Names

  • FLJ41309, MGC138396

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_169868.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  2. NR_169870.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  3. NR_169871.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  4. NR_172106.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  5. NR_172107.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  6. NR_172108.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  7. NR_172109.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  8. NR_172110.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  9. NR_172111.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  10. NR_172112.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  11. NR_172113.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  12. NR_172114.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  13. NR_172115.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  14. NR_172116.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  15. NR_172117.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  16. NR_172118.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  17. NR_172119.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  18. NR_172120.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  19. NR_172121.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598
  20. NR_172122.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010598

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    82278650..82318806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001017971.4: Suppressed sequence

    Description
    NM_001017971.4: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  2. NM_001039779.1: Suppressed sequence

    Description
    NM_001039779.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
  3. NM_001349371.3: Suppressed sequence

    Description
    NM_001349371.3: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  4. NM_001349372.3: Suppressed sequence

    Description
    NM_001349372.3: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  5. NM_001349373.3: Suppressed sequence

    Description
    NM_001349373.3: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  6. NM_001349374.3: Suppressed sequence

    Description
    NM_001349374.3: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  7. NM_001386086.1: Suppressed sequence

    Description
    NM_001386086.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  8. NM_001386087.1: Suppressed sequence

    Description
    NM_001386087.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  9. NM_001386089.1: Suppressed sequence

    Description
    NM_001386089.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  10. NM_001386090.1: Suppressed sequence

    Description
    NM_001386090.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  11. NM_001386091.1: Suppressed sequence

    Description
    NM_001386091.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  12. NM_001386092.1: Suppressed sequence

    Description
    NM_001386092.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  13. NM_001386097.1: Suppressed sequence

    Description
    NM_001386097.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  14. NM_001386099.1: Suppressed sequence

    Description
    NM_001386099.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  15. NM_001386101.1: Suppressed sequence

    Description
    NM_001386101.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  16. NM_001386102.1: Suppressed sequence

    Description
    NM_001386102.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  17. NM_001386103.1: Suppressed sequence

    Description
    NM_001386103.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  18. NM_001386105.1: Suppressed sequence

    Description
    NM_001386105.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  19. NM_001386107.1: Suppressed sequence

    Description
    NM_001386107.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  20. NM_001386110.1: Suppressed sequence

    Description
    NM_001386110.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  21. NM_001386111.1: Suppressed sequence

    Description
    NM_001386111.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  22. NM_001386114.1: Suppressed sequence

    Description
    NM_001386114.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  23. NM_001386115.1: Suppressed sequence

    Description
    NM_001386115.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  24. NM_001386116.1: Suppressed sequence

    Description
    NM_001386116.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  25. NM_001386117.1: Suppressed sequence

    Description
    NM_001386117.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  26. NM_001386118.1: Suppressed sequence

    Description
    NM_001386118.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  27. NM_001386119.1: Suppressed sequence

    Description
    NM_001386119.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  28. NM_001386120.1: Suppressed sequence

    Description
    NM_001386120.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  29. NM_001386121.1: Suppressed sequence

    Description
    NM_001386121.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  30. NM_001386122.1: Suppressed sequence

    Description
    NM_001386122.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  31. NM_001386123.1: Suppressed sequence

    Description
    NM_001386123.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  32. NM_001386124.1: Suppressed sequence

    Description
    NM_001386124.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
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