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TAX1BP1 Tax1 binding protein 1 [ Homo sapiens (human) ]

Gene ID: 8887, updated on 7-Jul-2024

Summary

Official Symbol
TAX1BP1provided by HGNC
Official Full Name
Tax1 binding protein 1provided by HGNC
Primary source
HGNC:HGNC:11575
See related
Ensembl:ENSG00000106052 MIM:605326; AllianceGenome:HGNC:11575
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
T6BP; TXBP151; CALCOCO3
Summary
This gene encodes a HTLV-1 tax1 binding protein. The encoded protein interacts with TNFAIP3, and inhibits TNF-induced apoptosis by mediating the TNFAIP3 anti-apoptotic activity. Degradation of this protein by caspase-3-like family proteins is associated with apoptosis induced by TNF. This protein may also have a role in the inhibition of inflammatory signaling pathways. Alternatively spliced transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, May 2011]
Expression
Ubiquitous expression in adrenal (RPKM 48.4), thyroid (RPKM 48.2) and 25 other tissues See more
Orthologs
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Genomic context

See TAX1BP1 in Genome Data Viewer
Location:
7p15.2
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (27739373..27829767)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (27875789..27967476)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (27778992..27869386)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene 3-hydroxyisobutyrate dehydrogenase Neighboring gene MPRA-validated peak6451 silencer Neighboring gene uncharacterized LOC105375211 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:27702239-27703056 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:27717219-27718418 Neighboring gene Sharpr-MPRA regulatory region 14722 Neighboring gene testis-expressed, seven-twelve, leukemia Neighboring gene MPRA-validated peak6452 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr7:27780579-27781442 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:27779716-27780578 Neighboring gene TAX1BP1 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:27903667-27904167 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:27907318-27908517 Neighboring gene JAZF zinc finger 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25793 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:28021142-28022341 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:28027281-28027840 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:28076521-28077720 Neighboring gene uncharacterized LOC105375208 Neighboring gene VISTA enhancer hs1430 Neighboring gene RNA, U6 small nuclear 979, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association analyses identify variants in developmental genes associated with hypospadias.
EBI GWAS Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables kinase binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein-macromolecule adaptor activity IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in extracellular exosome HDA PubMed 
is_active_in mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
tax1-binding protein 1
Names
TRAF6-binding protein
Tax1 (human T-cell leukemia virus type I) binding protein 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029523.1 RefSeqGene

    Range
    5790..95395
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001079864.3NP_001073333.1  tax1-binding protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001073333.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame donor splice site at an internal coding exon compared to variant 1. This results in a shorter isoform (2, also known as TXBP151-L) missing an internal protein segment compared to isoform 1. Variants 2 and 3 encode the same isoform.
    Source sequence(s)
    AF090891, AL136586, BU679319, DC424592
    Consensus CDS
    CCDS43561.1
    UniProtKB/TrEMBL
    B4DSG5
    Related
    ENSP00000265393.6, ENST00000265393.10
    Conserved Domains (1) summary
    cl25732
    Location:17460
    SMC_N; RecF/RecN/SMC N terminal domain
  2. NM_001206901.1NP_001193830.1  tax1-binding protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001193830.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) contains an alternate 5' non-coding exon, and uses an alternate in-frame donor splice site at an internal coding exon compared to variant 1. This results in a shorter isoform (2, also known as TXBP151-L) missing an internal protein segment compared to isoform 1. Variants 2 and 3 encode the same isoform.
    Source sequence(s)
    AF090891, AK299729, AL136586, BU679319
    Consensus CDS
    CCDS43561.1
    UniProtKB/TrEMBL
    B4DSG5
    Related
    ENSP00000444811.1, ENST00000543117.5
    Conserved Domains (1) summary
    cl25732
    Location:17460
    SMC_N; RecF/RecN/SMC N terminal domain
  3. NM_001206902.2NP_001193831.1  tax1-binding protein 1 isoform 3

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) is missing an internal coding exon compared to variant 1. This results in the creation of an upstream ORF (uORF), translation of which will render this transcript a candidate for nonsense-mediated mRNA decay (NMD). However, since the uORF has a weak Kozak signal, translation from an in-frame downstream AUG is possible by leaky scanning, resulting in an isoform (3) with a shorter N-terminus and missing an internal protein segment compared to isoform 1.
    Source sequence(s)
    AF090891, AL136586, BU679319, DC424592
    Consensus CDS
    CCDS56471.1
    UniProtKB/Swiss-Prot
    Q86VP1
    Related
    ENSP00000391907.2, ENST00000433216.6
    Conserved Domains (1) summary
    cl23720
    Location:14104
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
  4. NM_001362794.2NP_001349723.1  tax1-binding protein 1 isoform 4

    Status: REVIEWED

    Source sequence(s)
    AI580161, AI650286, BP208089, BU680065, CA418315, CB138720, DA176922, DB169908, DC357536
    UniProtKB/TrEMBL
    B4DSG5
    Conserved Domains (1) summary
    cl25732
    Location:17460
    SMC_N; RecF/RecN/SMC N terminal domain
  5. NM_001362795.2NP_001349724.1  tax1-binding protein 1 isoform 5

    Status: REVIEWED

    Source sequence(s)
    AA100874, AI650286, BP208089, BU680065, CA418315, CB138720, DA176922, DB169908, DC357536
    UniProtKB/TrEMBL
    B4DSG5
    Conserved Domains (1) summary
    cl25732
    Location:17460
    SMC_N; RecF/RecN/SMC N terminal domain
  6. NM_006024.7NP_006015.4  tax1-binding protein 1 isoform 1

    See identical proteins and their annotated locations for NP_006015.4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AL136586, BU679319, DC424592
    Consensus CDS
    CCDS5415.1
    UniProtKB/Swiss-Prot
    A4D196, B4DKU7, E7ENV2, O60398, O95770, Q13311, Q86VP1, Q9BQG5, Q9UI88
    UniProtKB/TrEMBL
    B8ZZD4
    Related
    ENSP00000379612.2, ENST00000396319.7
    Conserved Domains (2) summary
    pfam07888
    Location:17460
    CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like
    cl23720
    Location:131261
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    27739373..27829767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    27875789..27967476
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)