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rab1D Rab GTPase [ Dictyostelium discoideum AX4 ]

Gene ID: 8624886, updated on 18-Sep-2024

Summary

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Official Symbol
rab1D
Official Full Name
Rab GTPase
Primary source
dictyBase:DDB_G0284985
Locus tag
DDB_G0284985
See related
AmoebaDB:DDB_G0284985; VEuPathDB:DDB_G0284985
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
Old locus tag
DDBDRAFT_0186299; DDBDRAFT_0229398; DDB_0186299; DDB_0229398
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_007090.3 (2756032..2757408, complement)

Chromosome 4 - NC_007090.3Genomic Context describing neighboring genes Neighboring gene enoyl Coenzyme A hydratase, mitochondrial Neighboring gene Cna B-type domain-containing protein Neighboring gene vacuolar sorting protein 9 domain-containing protein Neighboring gene ncRNA Neighboring gene flap structure specific endonuclease 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007090.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional analysis of novel Rab GTPases identified in the proteome of purified Legionella-containing vacuoles from macrophages. Hoffmann C, et al. Cell Microbiol, 2014 Jul. PMID 24373249
  2. Proteome analysis of Legionella vacuoles purified by magnetic immunoseparation reveals secretory and endosomal GTPases. Urwyler S, et al. Traffic, 2009 Jan. PMID 18980612
  3. Dictyostelium lipid droplets host novel proteins. Du X, et al. Eukaryot Cell, 2013 Nov. PMID 24036346, Free PMC Article
  4. Proteomics fingerprinting of phagosome maturation and evidence for the role of a Galpha during uptake. Gotthardt D, et al. Mol Cell Proteomics, 2006 Dec. PMID 16926386
  5. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in endomembrane system IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in lipid droplet HDA PubMed 
located_in pathogen-containing vacuole HDA PubMed 
located_in phagocytic vesicle HDA PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Rab GTPase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007090.3 Reference assembly

    Range
    2756032..2757408 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_634883.1 → XP_639975.1  Rab GTPase [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_639975.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q54NU2
    Conserved Domains (2) summary
    smart00175
    Location:11 → 174
    RAB; Rab subfamily of small GTPases
    cd01869
    Location:9 → 174
    Rab1_Ypt1; Rab GTPase family 1 includes the yeast homolog Ypt1
Nucleotide Protein
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Gene LinkOut

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