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sapA saposin A [ Dictyostelium discoideum AX4 ]

Gene ID: 8624399, updated on 11-Apr-2024

Summary

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Gene symbol
sapA
Gene description
saposin A
Primary source
dictyBase:DDB_G0284043
Locus tag
DDB_G0284043
Gene type
protein coding
RNA name
saposin A
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0185822; DDBDRAFT_0191481; DDB_0185822; DDB_0191481
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_007090.3 (1521553..1523257)

Chromosome 4 - NC_007090.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene HisK family protein kinase Neighboring gene regulator of chromosome condensation domain-containing protein Neighboring gene IKI3 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007090.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. How Phagocytic Cells Kill Different Bacteria: a Quantitative Analysis Using Dictyostelium discoideum. Jauslin T, et al. mBio, 2021 Feb 16. PMID 33593980, Free PMC Article
  2. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to Gram-negative bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in killing of cells of another organism IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Names
saposin A

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007090.3 Reference assembly

    Range
    1521553..1523257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_633637.1 → XP_638729.1  saposin A [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_638729.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q54Q68, Q94472
    Conserved Domains (3) summary
    smart00741
    Location:228 → 301
    SapB; Saposin (B) Domains
    pfam03489
    Location:270 → 301
    SapB_2; Saposin-like type B, region 2
    pfam05184
    Location:33 → 67
    SapB_1; Saposin-like type B, region 1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q54Q68.1

Gene LinkOut

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Molecular Biology Databases