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DDB_G0275919 hypothetical protein [ Dictyostelium discoideum AX4 ]

Gene ID: 8620196, updated on 11-Apr-2024

Summary

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Gene symbol
DDB_G0275919
Gene description
hypothetical protein
Primary source
dictyBase:DDB_G0275919
Locus tag
DDB_G0275919
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0217723; DDB_0217723
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_007088.5 (6037798..6040161, complement)

Chromosome 2 - NC_007088.5Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene DUF781 family protein Neighboring gene Na-H exchanger

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007088.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of Dictyostelium discoideum. Glöckner G, et al. Nature, 2002 Jul 4. PMID 12097910
  2. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables rRNA (guanine) methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in rRNA methylation IEA
Inferred from Electronic Annotation
more info
  
involved_in rRNA modification IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Names
hypothetical protein
XP_643609.1
  • Similar to Dictyostelium discoideum (Slime mold). prespore-specific protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007088.5 Reference assembly

    Range
    6037798..6040161 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_638517.1 → XP_643609.1  hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_643609.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q552S2
    Conserved Domains (3) summary
    PRK11181
    Location:375 → 687
    PRK11181; 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
    pfam00588
    Location:506 → 682
    SpoU_methylase; SpoU rRNA Methylase family
    cl06870
    Location:375 → 450
    SpoU_sub_bind; RNA 2'-O ribose methyltransferase substrate binding
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q552S2.1

Gene LinkOut

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Molecular Biology Databases