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CCDC183 coiled-coil domain containing 183 [ Homo sapiens (human) ]

Gene ID: 84960, updated on 21-Dec-2019

Summary

Official Symbol
CCDC183provided by HGNC
Official Full Name
coiled-coil domain containing 183provided by HGNC
Primary source
HGNC:HGNC:28236
See related
Ensembl:ENSG00000213213 MIM:615955
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PARF; KIAA1984; bA216L13.7
Expression
Broad expression in testis (RPKM 17.0), prostate (RPKM 9.5) and 17 other tissues See more
Orthologs

Genomic context

See CCDC183 in Genome Data Viewer
Location:
9q34.3
Exon count:
14
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (136796338..136807741)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (139690033..139702364)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene CRISPRi-validated cis-regulatory element chr9.4332 Neighboring gene transmembrane protein 141 Neighboring gene CCDC183 antisense RNA 1 Neighboring gene iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene Neighboring gene RAB, member RAS oncogene family like 6 Neighboring gene nucleolin pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • KIAA1984, MGC15438

General protein information

Preferred Names
coiled-coil domain-containing protein 183

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039374.5NP_001034463.4  coiled-coil domain-containing protein 183

    See identical proteins and their annotated locations for NP_001034463.4

    Status: VALIDATED

    Source sequence(s)
    AW572474, BC007542, BC137318, DA235138, DB446839
    Consensus CDS
    CCDS43906.1
    UniProtKB/Swiss-Prot
    Q5T5S1
    UniProtKB/TrEMBL
    Q96IG8
    Related
    ENSP00000338013.6, ENST00000338005.7
    Conserved Domains (1) summary
    COG4310
    Location:8137
    COG4310; Uncharacterized protein, cotains an aminopeptidase-like domain [General function prediction only]

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    136796338..136807741
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_032874.2: Suppressed sequence

    Description
    NM_032874.2: This RefSeq was permanently suppressed because it contained intronic sequence and was a nonsense-mediated mRNA candidate.
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