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Galactose oxidase/kelch repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842352, updated on 18-Sep-2024

Summary

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Official Full Name
Galactose oxidase/kelch repeat superfamily protein
Primary source
TAIR:AT1G60570
Locus tag
AT1G60570
See related
Araport:AT1G60570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8A5.11; F8A5_11
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (22311836..22312981)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene enoyl-CoA hydratase/isomerase D Neighboring gene SWIM zinc finger family protein Neighboring gene ncRNA Neighboring gene tRNA-Gly

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Galactose oxidase/kelch repeat superfamily protein
NP_176257.1
  • Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G19930.1); Has 2159 Blast hits to 2040 proteins in 157 species: Archae - 8; Bacteria - 131; Metazoa - 640; Fungi - 8; Plants - 1197; Viruses - 129; Other Eukaryotes - 46 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    22311836..22312981
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104741.1 → NP_176257.1  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176257.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22698
    UniProtKB/TrEMBL
    A0A178W1Q2
    Conserved Domains (3) summary
    sd00038
    Location:116 → 155
    Kelch; KELCH repeat [structural motif]
    pfam00646
    Location:22 → 67
    F-box; F-box domain
    pfam01344
    Location:159 → 201
    Kelch_1; Kelch motif
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O22698.1

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