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SYDE2 synapse defective Rho GTPase homolog 2 [ Homo sapiens (human) ]

Gene ID: 84144, updated on 10-Dec-2024

Summary

Official Symbol
SYDE2provided by HGNC
Official Full Name
synapse defective Rho GTPase homolog 2provided by HGNC
Primary source
HGNC:HGNC:25841
See related
Ensembl:ENSG00000097096 MIM:620834; AllianceGenome:HGNC:25841
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable GTPase activator activity. Acts upstream of or within cell migration. Predicted to be located in cytosol. Predicted to be active in synaptic membrane. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Ubiquitous expression in lung (RPKM 2.4), placenta (RPKM 1.5) and 25 other tissues See more
Orthologs
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Genomic context

See SYDE2 in Genome Data Viewer
Location:
1p22.3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (85152491..85201016, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (84997997..85042131, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (85622572..85666699, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:85527645-85528145 Neighboring gene dynein axonemal intermediate chain 3 Neighboring gene microRNA 4423 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1266 Neighboring gene NANOG hESC enhancer GRCh37_chr1:85618513-85619014 Neighboring gene uncharacterized LOC124904207 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:85665814-85666425 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1031 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:85690807-85690967 Neighboring gene uncharacterized LOC105378821 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1032 Neighboring gene Sharpr-MPRA regulatory region 4548 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1033 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1267 Neighboring gene chromosome 1 open reading frame 52

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ13815

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables GTPase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables GTPase activator activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables GTPase activator activity TAS
Traceable Author Statement
more info
 
Process Evidence Code Pubs
involved_in activation of GTPase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in cell migration IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within cell migration IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of Ras protein signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in regulation of small GTPase mediated signal transduction TAS
Traceable Author Statement
more info
 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytosol TAS
Traceable Author Statement
more info
 
is_active_in synaptic membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
rho GTPase-activating protein SYDE2
Names
protein syd-1 homolog 2
synapse defective 1, Rho GTPase, homolog 2
synapse defective protein 1 homolog 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_032184.2NP_115560.1  rho GTPase-activating protein SYDE2

    See identical proteins and their annotated locations for NP_115560.1

    Status: VALIDATED

    Source sequence(s)
    AL603750
    Consensus CDS
    CCDS44169.1
    UniProtKB/Swiss-Prot
    Q5VT96, Q5VT97, Q8NDB8, Q9H8A6
    UniProtKB/TrEMBL
    A0A2X0SFY5
    Related
    ENSP00000340594.5, ENST00000341460.6
    Conserved Domains (2) summary
    cl02570
    Location:8141028
    RhoGAP; RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when ...
    cl14603
    Location:679794
    C2; C2 domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    85152491..85201016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017002483.2XP_016857972.2  rho GTPase-activating protein SYDE2 isoform X1

    UniProtKB/TrEMBL
    A0A2X0SFY5
  2. XM_017002484.3XP_016857973.2  rho GTPase-activating protein SYDE2 isoform X2

    UniProtKB/TrEMBL
    A0A2X0SFY5
  3. XM_047431920.1XP_047287876.1  rho GTPase-activating protein SYDE2 isoform X4

  4. XM_006710946.4XP_006711009.2  rho GTPase-activating protein SYDE2 isoform X3

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    84997997..85042131 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054339085.1XP_054195060.1  rho GTPase-activating protein SYDE2 isoform X1

    UniProtKB/TrEMBL
    A0A2X0SFY5
  2. XM_054339086.1XP_054195061.1  rho GTPase-activating protein SYDE2 isoform X2

    UniProtKB/TrEMBL
    A0A2X0SFY5
  3. XM_054339088.1XP_054195063.1  rho GTPase-activating protein SYDE2 isoform X4

  4. XM_054339087.1XP_054195062.1  rho GTPase-activating protein SYDE2 isoform X3