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RAP2.1 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841117, updated on 18-Sep-2024

Summary

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Official Symbol
RAP2.1
Official Full Name
uncharacterized protein
Primary source
TAIR:AT1G46768
Locus tag
AT1G46768
See related
Araport:AT1G46768
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2G19.32; F2G19_32; related to AP2 1
Summary
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10.
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (17265586..17266824, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene hypothetical protein (Protein of unknown function, DUF601) Neighboring gene F-box family protein Neighboring gene F-box associated ubiquitination effector family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis EAR-motif-containing protein RAP2.1 functions as an active transcriptional repressor to keep stress responses under tight control. Dong CJ, et al. BMC Plant Biol, 2010 Mar 16. PMID 20230648, Free PMC Article
  2. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
  3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RAP2.1 is a DREB-type, EAR-motif-containing transcriptional repressor that negatively regulates plant responses to cold and drought stresses.
    Title: The Arabidopsis EAR-motif-containing protein RAP2.1 functions as an active transcriptional repressor to keep stress responses under tight control.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_103607.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within response to cold IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to water deprivation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_001322275.1
  • related to AP2 1
NP_001322276.1
  • related to AP2 1
NP_564496.1
  • related to AP2 1 (RAP2.1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 10 (TAIR:AT4G36900.1); Has 5681 Blast hits to 5559 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5675; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    17265586..17266824 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333266.1 → NP_001322275.1  uncharacterized protein AT1G46768 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W8X3, A0A1P8ATH8, A0A384KYA3, A0A7G2DVV2
    Conserved Domains (1) summary
    smart00380
    Location:31 → 93
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

  2. NM_001333265.1 → NP_001322276.1  uncharacterized protein AT1G46768 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23103, Q42165, Q8LC30, Q9C630
    UniProtKB/TrEMBL
    A0A178WAW3, A0A7G2DVV2
    Conserved Domains (1) summary
    smart00380
    Location:31 → 93
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

  3. NM_103607.4 → NP_564496.1  uncharacterized protein AT1G46768 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564496.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23103, Q42165, Q8LC30, Q9C630
    UniProtKB/TrEMBL
    A0A178WAW3, A0A7G2DVV2
    Conserved Domains (1) summary
    smart00380
    Location:31 → 93
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LC30.1

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