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TMPIT-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840217, updated on 18-Sep-2024

Summary

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Official Full Name
TMPIT-like protein
Primary source
TAIR:AT1G33230
Locus tag
AT1G33230
See related
Araport:AT1G33230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T9L6.9; T9L6_9
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (12046379..12050095)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene GT-2-like 1 Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_103051.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TMPIT-like protein
NP_564420.1
  • TMPIT-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: TMPIT-like protein (TAIR:AT4G10430.3); Has 250 Blast hits to 250 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    12046379..12050095
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333030.1 → NP_001320738.1  TMPIT-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ANQ6, A0A654EG67
    Conserved Domains (1) summary
    pfam07851
    Location:81 → 342
    TMPIT; TMPIT-like protein

  2. NM_103051.5 → NP_564420.1  TMPIT-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564420.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WLH1, A0A7G2DXM2, Q93ZW4
    Conserved Domains (1) summary
    pfam07851
    Location:37 → 335
    TMPIT; TMPIT-like protein
Nucleotide Protein
Heading Accession and Version

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