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FAD-binding Berberine family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839183, updated on 18-Sep-2024

Summary

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Official Full Name
FAD-binding Berberine family protein
Primary source
TAIR:AT1G26410
Locus tag
AT1G26410
See related
Araport:AT1G26410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1K7.21; T1K7_21
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (9138604..9140439, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene FAD-binding Berberine family protein Neighboring gene FAD-binding Berberine family protein Neighboring gene FAD-binding Berberine family protein Neighboring gene tRNA-Asn

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The AP2/ERF transcription factor AtERF73/HRE1 modulates ethylene responses during hypoxia in Arabidopsis. Yang CY, et al. Plant Physiol, 2011 May. PMID 21398256, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_102405.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to hypoxia IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
FAD-binding Berberine family protein
NP_173965.1
  • FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G26420.1); Has 4489 Blast hits to 4292 proteins in 637 species: Archae - 40; Bacteria - 1906; Metazoa - 5; Fungi - 1692; Plants - 699; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9138604..9140439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102405.3 → NP_173965.1  FAD-binding Berberine family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173965.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RWA4, Q9FZC7
    UniProtKB/TrEMBL
    A0A654EDS9
    Conserved Domains (3) summary
    COG0277
    Location:102 → 549
    GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
    pfam01565
    Location:102 → 238
    FAD_binding_4; FAD binding domain
    pfam08031
    Location:490 → 547
    BBE; Berberine and berberine like
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FZC7.1

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