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CYP79F1 cytochrome p450 79f1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838211, updated on 10-Oct-2019

Summary

Gene symbol
CYP79F1
Gene description
cytochrome p450 79f1
Primary source
Araport:AT1G16410
Locus tag
AT1G16410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
BUS1; BUSHY 1; cytochrome p450 79f1; F3O9.21; F3O9_21; SPS1; SUPERSHOOT 1
Summary
member of CYP79F

Genomic context

See CYP79F1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (5608682..5612064)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene organic cation/carnitine transporter 3 Neighboring gene cytochrome P450, family 79, subfamily F, polypeptide 2 Neighboring gene metacaspase 8 Neighboring gene Surfeit locus protein 5 subunit 22 of Mediator complex

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_101507.3
NM_202111.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
glucosinolate biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
glucosinolate biosynthetic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
response to insect IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
chloroplast ISM
Inferred from Sequence Model
more info
 
endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
nucleus HDA PubMed 

General protein information

Preferred Names
cytochrome p450 79f1
NP_563996.2
  • cytochrome p450 79f1 (CYP79F1); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 79, subfamily F, polypeptide 2 (TAIR:AT1G16400.1); Has 27252 Blast hits to 27093 proteins in 1494 species: Archae - 44; Bacteria - 2170; Metazoa - 10673; Fungi - 5027; Plants - 8510; Viruses - 0; Other Eukaryotes - 828 (source: NCBI BLink).
NP_973840.1
  • cytochrome p450 79f1 (CYP79F1); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 79, subfamily F, polypeptide 2 (TAIR:AT1G16400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5608682..5612064
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101507.3NP_563996.2  cytochrome p450 79f1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563996.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q949U1
    Conserved Domains (1) summary
    PLN03018
    Location:1538
    PLN03018; homomethionine N-hydroxylase
  2. NM_202111.2NP_973840.1  cytochrome p450 79f1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973840.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q949U1
    Conserved Domains (1) summary
    cl12078
    Location:1414
    p450; Cytochrome P450
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