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ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830840, updated on 18-Sep-2024

Summary

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Official Full Name
ARM repeat superfamily protein
Primary source
TAIR:AT5G09800
Locus tag
AT5G09800
See related
Araport:AT5G09800
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17I14.10; F17I14_10
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (3042904..3044546, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene TRITHORAX-RELATED PROTEIN 5 Neighboring gene miscRNA Neighboring gene inflorescence deficient in abscission (IDA)-like 3 Neighboring gene actin 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_121017.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ARM repeat superfamily protein
NP_196542.1
  • ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: CYS, MET, PRO, and GLY protein 2 (TAIR:AT5G64660.1); Has 1911 Blast hits to 1878 proteins in 97 species: Archae - 0; Bacteria - 16; Metazoa - 84; Fungi - 4; Plants - 1697; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3042904..3044546 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121017.3 → NP_196542.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196542.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LXE3
    UniProtKB/TrEMBL
    A0A178UA46, A0A5S9Y3L7
    Conserved Domains (1) summary
    cd16664
    Location:15 → 57
    RING-Ubox_PUB; U-box domain, a modified RING finger, found in Arabidopsis plant U-box proteins (AtPUB) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LXE3.1

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