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RNA-directed DNA polymerase (reverse transcriptase) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830284, updated on 18-Sep-2024

Summary

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Official Full Name
RNA-directed DNA polymerase (reverse transcriptase)
Primary source
TAIR:AT5G04050
Locus tag
AT5G04050
See related
Araport:AT5G04050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8F6.260; F8F6_260
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (1096016..1099042)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Putative membrane lipoprotein Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene cysteine-rich TM module stress tolerance protein Neighboring gene histidine-tRNA ligase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. nMAT3 is an essential maturase splicing factor required for holo-complex I biogenesis and embryo development in Arabidopsis thaliana plants. Shevtsov-Tal S, et al. Plant J, 2021 May. PMID 33683754
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001161223.1
NM_120487.7

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in RNA splicing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA-directed DNA polymerase (reverse transcriptase)
NP_001154695.1
  • RNA-directed DNA polymerase (reverse transcriptase); FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: Intron maturase, type II family protein (TAIR:AT1G74350.1); Has 3089 Blast hits to 3057 proteins in 1086 species: Archae - 3; Bacteria - 2166; Metazoa - 8; Fungi - 43; Plants - 770; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
NP_196025.5
  • RNA-directed DNA polymerase (reverse transcriptase); FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: Intron maturase, type II family protein (TAIR:AT1G74350.1); Has 3461 Blast hits to 3086 proteins in 1121 species: Archae - 3; Bacteria - 2166; Metazoa - 4; Fungi - 43; Plants - 1152; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1096016..1099042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120487.7 → NP_196025.5  RNA-directed DNA polymerase (reverse transcriptase) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196025.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KI47
    Conserved Domains (1) summary
    cd01651
    Location:99 → 357
    RT_G2_intron; RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable ...

  2. NM_001161223.1 → NP_001154695.1  RNA-directed DNA polymerase (reverse transcriptase) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154695.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KI46, Q9LZA5
    Conserved Domains (1) summary
    cd01651
    Location:99 → 357
    RT_G2_intron; RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable ...
Nucleotide Protein
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