U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

J11 Chaperone DnaJ-domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829760, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
J11
Official Full Name
Chaperone DnaJ-domain superfamily protein
Primary source
TAIR:AT4G36040
Locus tag
AT4G36040
See related
Araport:AT4G36040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DJC23; DNA J protein C23; DnaJ11; T19K4.170; T19K4_170
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See J11 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (17049152..17050608, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cold shock domain protein 1 Neighboring gene ncRNA Neighboring gene armadillo repeat only 3 Neighboring gene endonuclease/exonuclease/phosphatase family protein Neighboring gene ncRNA Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene calcium-dependent protein kinase 18

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Small chloroplast-targeted DnaJ proteins are involved in optimization of photosynthetic reactions in Arabidopsis thaliana. Chen KM, et al. BMC Plant Biol, 2010 Mar 7. PMID 20205940, Free PMC Article
  2. Evolution of chloroplast J proteins. Chiu CC, et al. PLoS One, 2013. PMID 23894646, Free PMC Article
  3. In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Narsai R, et al. Plant Physiol, 2011 Nov. PMID 21908688, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198
  5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A lack of AtJ8, AtJ11, or AtJ20 triggers a global stress response and therefore confers the plants greater tolerance to oxidative stress.
    Title: Small chloroplast-targeted DnaJ proteins are involved in optimization of photosynthetic reactions in Arabidopsis thaliana.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

NM_119771.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plastid HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Chaperone DnaJ-domain superfamily protein
NP_195328.1
  • Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding, response to stress; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT2G17880.1); Has 18528 Blast hits to 18528 proteins in 3080 species: Archae - 133; Bacteria - 8129; Metazoa - 2968; Fungi - 1612; Plants - 1794; Viruses - 5; Other Eukaryotes - 3887 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    17049152..17050608 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119771.4 → NP_195328.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195328.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65641, Q9FYB5
    UniProtKB/TrEMBL
    A0A178V479, A0A654FWF1, Q1H544
    Conserved Domains (1) summary
    pfam00226
    Location:65 → 130
    DnaJ; DnaJ domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FYB5.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools