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PIRL4 plant intracellular ras group-related LRR 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829699, updated on 18-Sep-2024

Summary

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Official Symbol
PIRL4
Official Full Name
plant intracellular ras group-related LRR 4
Primary source
TAIR:AT4G35470
Locus tag
AT4G35470
See related
Araport:AT4G35470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15J1.40; F15J1_40; plant intracellular ras group-related LRR 4
Summary
Encodes PIRL4, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
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Genomic context

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See PIRL4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (16846138..16849183)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ankyrin repeat-containing protein 2 Neighboring gene NADPH-dependent thioredoxin reductase B Neighboring gene uncharacterized protein Neighboring gene RING-H2 finger A3B Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
  2. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
  3. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
  4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001342351.1
NM_119712.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
plant intracellular ras group-related LRR 4
NP_195272.1
  • plant intracellular ras group-related LRR 4 (PIRL4); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 5 (TAIR:AT2G17440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16846138..16849183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119712.6 → NP_195272.1  plant intracellular ras group-related LRR 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195272.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SVW8
    UniProtKB/TrEMBL
    A0A178UV21, A0A5S9XYV0, A0A654FVQ8
    Conserved Domains (2) summary
    COG4886
    Location:194 → 471
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:271 → 293
    LRR_RI; leucine-rich repeat [structural motif]

  2. NM_001342351.1 → NP_001329708.1  plant intracellular ras group-related LRR 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B8I3, A0A654FVQ8
    Conserved Domains (2) summary
    COG4886
    Location:194 → 471
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:271 → 293
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SVW8.1

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