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DYSF dysferlin [ Homo sapiens (human) ]

Gene ID: 8291, updated on 9-Sep-2018

Summary

Official Symbol
DYSFprovided by HGNC
Official Full Name
dysferlinprovided by HGNC
Primary source
HGNC:HGNC:3097
See related
Ensembl:ENSG00000135636 MIM:603009; Vega:OTTHUMG00000129757
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MMD1; FER1L1; LGMD2B
Summary
The protein encoded by this gene belongs to the ferlin family and is a skeletal muscle protein found associated with the sarcolemma. It is involved in muscle contraction and contains C2 domains that play a role in calcium-mediated membrane fusion events, suggesting that it may be involved in membrane regeneration and repair. In addition, the protein encoded by this gene binds caveolin-3, a skeletal muscle membrane protein which is important in the formation of caveolae. Specific mutations in this gene have been shown to cause autosomal recessive limb girdle muscular dystrophy type 2B (LGMD2B) as well as Miyoshi myopathy. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2008]
Expression
Broad expression in spleen (RPKM 14.1), placenta (RPKM 13.8) and 21 other tissues See more
Orthologs

Genomic context

See DYSF in Genome Data Viewer
Location:
2p13.2
Exon count:
58
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 2 NC_000002.12 (71453154..71686763)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (71680347..71913895)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374797 Neighboring gene zinc finger protein 638 Neighboring gene RNA, U6 small nuclear 105, pseudogene Neighboring gene VISTA enhancer hs2170 Neighboring gene VISTA enhancer hs1479 Neighboring gene uncharacterized LOC107985896 Neighboring gene ribosomal protein S20 pseudogene 10

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
A genome-wide association study identifies protein quantitative trait loci (pQTLs).
NHGRI GWA Catalog
Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
NHGRI GWA Catalog

HIV-1 interactions

Replication interactions

Interaction Pubs
Knockdown of dysferlin, limb girdle muscular dystrophy 2B (DYSF) by siRNA inhibits HIV-1 replication in HeLa-derived TZM-bl cells PubMed

Protein interactions

Protein Gene Interaction Pubs
Vpr vpr A stable-isotope labeling by amino acids in cell culture coupled with mass spectrometry-based proteomics identifies upregulation of dysferlin (DYSF) expression by HIV-1 Vpr in Vpr transduced macrophages PubMed

Go to the HIV-1, Human Interaction Database

Pathways from BioSystems

  • Muscle contraction, organism-specific biosystem (from REACTOME)
    Muscle contraction, organism-specific biosystemIn this module, the processes by which calcium binding triggers actin - myosin interactions and force generation in smooth and striated muscle tissues are annotated.
  • Smooth Muscle Contraction, organism-specific biosystem (from REACTOME)
    Smooth Muscle Contraction, organism-specific biosystemLayers of smooth muscle cells can be found in the walls of numerous organs and tissues within the body. Smooth muscle tissue lacks the striated banding pattern characteristic of skeletal and cardiac ...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ00175, FLJ90168

Gene Ontology Provided by GOA

Function Evidence Code Pubs
calcium ion binding IDA
Inferred from Direct Assay
more info
PubMed 
calcium-dependent phospholipid binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
phospholipid binding IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
muscle contraction TAS
Traceable Author Statement
more info
 
plasma membrane repair IEA
Inferred from Electronic Annotation
more info
 
vesicle fusion IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
T-tubule IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasmic vesicle membrane TAS
Traceable Author Statement
more info
 
early endosome IDA
Inferred from Direct Assay
more info
PubMed 
endocytic vesicle IDA
Inferred from Direct Assay
more info
PubMed 
endosome IDA
Inferred from Direct Assay
more info
PubMed 
extracellular exosome HDA PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
lamellipodium IEA
Inferred from Electronic Annotation
more info
 
late endosome IDA
Inferred from Direct Assay
more info
PubMed 
microtubule organizing center IDA
Inferred from Direct Assay
more info
 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
sarcolemma IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
dysferlin
Names
dystrophy-associated fer-1-like 1
fer-1-like family member 1
fer-1-like protein 1
limb girdle muscular dystrophy 2B (autosomal recessive)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_008694.1 RefSeqGene

    Range
    5001..238141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001130455.1NP_001123927.1  dysferlin isoform 2

    See identical proteins and their annotated locations for NP_001123927.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 2 which is shorter than isoform 1.
    Source sequence(s)
    AF075575, DB292971, DQ267935
    Consensus CDS
    CCDS46331.1
    UniProtKB/Swiss-Prot
    O75923
    Related
    ENSP00000377678.2, OTTHUMP00000202234, ENST00000394120.6, OTTHUMT00000327473
    Conserved Domains (11) summary
    cd04011
    Location:218327
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11531281
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:381555
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:15801703
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5134
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:18141945
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:9471003
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:788860
    FerB; FerB (NUC096) domain
    pfam08151
    Location:325375
    FerI; FerI (NUC094) domain
    pfam08165
    Location:699756
    FerA; FerA (NUC095) domain
    pfam16165
    Location:19582044
    Ferlin_C; Ferlin C-terminus
  2. NM_001130976.1NP_001124448.1  dysferlin isoform 9

    See identical proteins and their annotated locations for NP_001124448.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (9) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at an upstream AUG and a shorter isoform (9) with an alternate N-terminus compared to isoform 1.
    Source sequence(s)
    AI128455, AI192657, AK074649, DB292971, EU515156
    UniProtKB/Swiss-Prot
    O75923
    Conserved Domains (11) summary
    cd04011
    Location:217326
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11381266
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:380540
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:15651688
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20133
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:17991930
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:932988
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:773845
    FerB; FerB (NUC096) domain
    pfam08151
    Location:324374
    FerI; FerI (NUC094) domain
    pfam08165
    Location:684741
    FerA; FerA (NUC095) domain
    pfam16165
    Location:19432029
    Ferlin_C; Ferlin C-terminus
  3. NM_001130977.1NP_001124449.1  dysferlin isoform 10

    See identical proteins and their annotated locations for NP_001124449.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (10) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at an upstream AUG and a shorter isoform (10) with an alternate N-terminus compared to isoform 1.
    Source sequence(s)
    AI192657, AI739271, AK074649, DB292971, EU515159
    UniProtKB/Swiss-Prot
    O75923
    Conserved Domains (11) summary
    cd04011
    Location:217326
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11381266
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:380540
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:15861709
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20133
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:18201951
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:932988
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:773845
    FerB; FerB (NUC096) domain
    pfam08151
    Location:324374
    FerI; FerI (NUC094) domain
    pfam08165
    Location:684741
    FerA; FerA (NUC095) domain
    pfam16165
    Location:19642050
    Ferlin_C; Ferlin C-terminus
  4. NM_001130978.1NP_001124450.1  dysferlin isoform 11

    See identical proteins and their annotated locations for NP_001124450.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (11) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at an upstream AUG and a shorter isoform (11) with an alternate N-terminus compared to isoform 1.
    Source sequence(s)
    AI128455, AI192657, AK074649, DB292971, EU515157
    Consensus CDS
    CCDS46326.1
    UniProtKB/Swiss-Prot
    O75923
    Related
    ENSP00000398305.2, OTTHUMP00000225471, ENST00000429174.6, OTTHUMT00000376569
    Conserved Domains (11) summary
    cd04011
    Location:217326
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11521280
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:380554
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:16001723
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20133
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:18341965
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:9461002
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:787859
    FerB; FerB (NUC096) domain
    pfam08151
    Location:324374
    FerI; FerI (NUC094) domain
    pfam08165
    Location:698755
    FerA; FerA (NUC095) domain
    pfam16165
    Location:19782064
    Ferlin_C; Ferlin C-terminus
  5. NM_001130979.1NP_001124451.1  dysferlin isoform 12

    See identical proteins and their annotated locations for NP_001124451.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (12) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at an upstream AUG and a shorter isoform (12) with an alternate N-terminus compared to isoform 1.
    Source sequence(s)
    AI128455, AI192657, AK074649, DB292971, EU515155
    Consensus CDS
    CCDS46323.1
    UniProtKB/Swiss-Prot
    O75923
    Related
    ENSP00000407046.2, OTTHUMP00000225494, ENST00000413539.6, OTTHUMT00000376611
    Conserved Domains (11) summary
    cd04011
    Location:248357
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11831311
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:411585
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:16101733
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20133
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:18441975
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:9771033
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:818890
    FerB; FerB (NUC096) domain
    pfam08151
    Location:355405
    FerI; FerI (NUC094) domain
    pfam08165
    Location:729786
    FerA; FerA (NUC095) domain
    pfam16165
    Location:19882074
    Ferlin_C; Ferlin C-terminus
  6. NM_001130980.1NP_001124452.1  dysferlin isoform 13

    See identical proteins and their annotated locations for NP_001124452.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (13) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at an upstream AUG and a shorter isoform (13) with an alternate N-terminus compared to isoform 1.
    Source sequence(s)
    AI128455, AI192657, AK074649, DB292971, EU515158
    Consensus CDS
    CCDS46325.1
    UniProtKB/Swiss-Prot
    O75923
    Related
    ENSP00000387137.1, OTTHUMP00000202235, ENST00000409762.5, OTTHUMT00000327474
    Conserved Domains (11) summary
    cd04011
    Location:248357
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11691297
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:411571
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:15961719
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20133
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:18301961
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:9631019
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:804876
    FerB; FerB (NUC096) domain
    pfam08151
    Location:355405
    FerI; FerI (NUC094) domain
    pfam08165
    Location:715772
    FerA; FerA (NUC095) domain
    pfam16165
    Location:19742060
    Ferlin_C; Ferlin C-terminus
  7. NM_001130981.1NP_001124453.1  dysferlin isoform 14

    See identical proteins and their annotated locations for NP_001124453.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (14) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at an upstream AUG and a shorter isoform (14) with an alternate N-terminus compared to isoform 1.
    Source sequence(s)
    AI128455, AI192657, AK074649, DB292971, EU515160
    Consensus CDS
    CCDS46324.1
    UniProtKB/Swiss-Prot
    O75923
    Related
    ENSP00000386547.3, OTTHUMP00000202241, ENST00000409582.7, OTTHUMT00000327480
    Conserved Domains (11) summary
    cd04011
    Location:248357
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11691297
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:411571
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:16171740
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20133
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:18511982
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:9631019
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:804876
    FerB; FerB (NUC096) domain
    pfam08151
    Location:355405
    FerI; FerI (NUC094) domain
    pfam08165
    Location:715772
    FerA; FerA (NUC095) domain
    pfam16165
    Location:19952081
    Ferlin_C; Ferlin C-terminus
  8. NM_001130982.1NP_001124454.1  dysferlin isoform 7

    See identical proteins and their annotated locations for NP_001124454.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (7) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 7 which is shorter than isoform 1.
    Source sequence(s)
    AF075575, DB292971, EU515161
    Consensus CDS
    CCDS46327.1
    UniProtKB/Swiss-Prot
    O75923
    Related
    ENSP00000386683.1, OTTHUMP00000202233, ENST00000409651.5, OTTHUMT00000327472
    Conserved Domains (11) summary
    cd04011
    Location:249358
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11841312
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:412586
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:16111734
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5134
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:18451976
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:9781034
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:819891
    FerB; FerB (NUC096) domain
    pfam08151
    Location:356406
    FerI; FerI (NUC094) domain
    pfam08165
    Location:730787
    FerA; FerA (NUC095) domain
    pfam16165
    Location:19892075
    Ferlin_C; Ferlin C-terminus
  9. NM_001130983.1NP_001124455.1  dysferlin isoform 6

    See identical proteins and their annotated locations for NP_001124455.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 6 which is shorter than isoform 1.
    Source sequence(s)
    AF075575, AK074649, DB292971, EU515157, EU515163
    Consensus CDS
    CCDS46330.1
    UniProtKB/Swiss-Prot
    O75923
    Related
    ENSP00000386512.1, OTTHUMP00000202237, ENST00000409366.5, OTTHUMT00000327476
    Conserved Domains (11) summary
    cd04011
    Location:218327
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11531281
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:381555
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:16011724
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5134
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:18351966
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:9471003
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:788860
    FerB; FerB (NUC096) domain
    pfam08151
    Location:325375
    FerI; FerI (NUC094) domain
    pfam08165
    Location:699756
    FerA; FerA (NUC095) domain
    pfam16165
    Location:19792065
    Ferlin_C; Ferlin C-terminus
  10. NM_001130984.1NP_001124456.1  dysferlin isoform 5

    See identical proteins and their annotated locations for NP_001124456.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 5 which is shorter than isoform 1.
    Source sequence(s)
    AF075575, AK074649, DB292971, EU515157, EU515165
    Consensus CDS
    CCDS46332.1
    UniProtKB/Swiss-Prot
    O75923
    Related
    ENSP00000386285.1, OTTHUMP00000202236, ENST00000409744.5, OTTHUMT00000327475
    Conserved Domains (11) summary
    cd04011
    Location:218327
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11391267
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:381541
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:15871710
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5134
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:18211952
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:933989
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:774846
    FerB; FerB (NUC096) domain
    pfam08151
    Location:325375
    FerI; FerI (NUC094) domain
    pfam08165
    Location:685742
    FerA; FerA (NUC095) domain
    pfam16165
    Location:19652051
    Ferlin_C; Ferlin C-terminus
  11. NM_001130985.1NP_001124457.1  dysferlin isoform 4

    See identical proteins and their annotated locations for NP_001124457.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 4 which is shorter than isoform 1.
    Source sequence(s)
    AF075575, DB292971, EU515164
    Consensus CDS
    CCDS46329.1
    UniProtKB/Swiss-Prot
    O75923
    Related
    ENSP00000386617.1, OTTHUMP00000202240, ENST00000410041.1, OTTHUMT00000327479
    Conserved Domains (11) summary
    cd04011
    Location:249358
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11701298
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:412572
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:15971720
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5134
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:18311962
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:9641020
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:805877
    FerB; FerB (NUC096) domain
    pfam08151
    Location:356406
    FerI; FerI (NUC094) domain
    pfam08165
    Location:716773
    FerA; FerA (NUC095) domain
    pfam16165
    Location:19752061
    Ferlin_C; Ferlin C-terminus
  12. NM_001130986.1NP_001124458.1  dysferlin isoform 3

    See identical proteins and their annotated locations for NP_001124458.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 3 which is shorter than isoform 1.
    Source sequence(s)
    AF075575, DB292971, EU515162
    UniProtKB/Swiss-Prot
    O75923
    Conserved Domains (11) summary
    cd04011
    Location:218327
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11391267
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:381541
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:15661689
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5134
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:18001931
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:933989
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:774846
    FerB; FerB (NUC096) domain
    pfam08151
    Location:325375
    FerI; FerI (NUC094) domain
    pfam08165
    Location:685742
    FerA; FerA (NUC095) domain
    pfam16165
    Location:19442030
    Ferlin_C; Ferlin C-terminus
  13. NM_001130987.1NP_001124459.1  dysferlin isoform 1

    See identical proteins and their annotated locations for NP_001124459.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AF075575, AK074649, DB292971, EU515157, EU515166
    Consensus CDS
    CCDS46328.1
    UniProtKB/Swiss-Prot
    O75923
    Related
    ENSP00000386881.3, OTTHUMP00000202238, ENST00000410020.7, OTTHUMT00000327477
    Conserved Domains (11) summary
    cd04011
    Location:249358
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11701298
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:412572
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:16181741
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5134
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:18521983
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:9641020
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:805877
    FerB; FerB (NUC096) domain
    pfam08151
    Location:356406
    FerI; FerI (NUC094) domain
    pfam08165
    Location:716773
    FerA; FerA (NUC095) domain
    pfam16165
    Location:19962082
    Ferlin_C; Ferlin C-terminus
  14. NM_003494.3NP_003485.1  dysferlin isoform 8

    See identical proteins and their annotated locations for NP_003485.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (8) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at an upstream AUG and a shorter isoform (8) with an alternate N-terminus compared to isoform 1.
    Source sequence(s)
    AF075575, AI128455, AI192657, DB292971
    Consensus CDS
    CCDS1918.1
    UniProtKB/Swiss-Prot
    O75923
    Related
    ENSP00000258104.3, OTTHUMP00000160176, ENST00000258104.7, OTTHUMT00000251970
    Conserved Domains (11) summary
    cd04011
    Location:217326
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11521280
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:380554
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:15791702
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20133
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:18131944
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:9461002
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:787859
    FerB; FerB (NUC096) domain
    pfam08151
    Location:324374
    FerI; FerI (NUC094) domain
    pfam08165
    Location:698755
    FerA; FerA (NUC095) domain
    pfam16165
    Location:19572043
    Ferlin_C; Ferlin C-terminus

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p12 Primary Assembly

    Range
    71453154..71686763
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005264585.5XP_005264642.1  dysferlin isoform X2

    Conserved Domains (11) summary
    cd04011
    Location:248357
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11831311
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:411585
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:16311754
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20133
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:18651996
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:9771033
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:818890
    FerB; FerB (NUC096) domain
    pfam08151
    Location:355405
    FerI; FerI (NUC094) domain
    pfam08165
    Location:729786
    FerA; FerA (NUC095) domain
    pfam16165
    Location:20092095
    Ferlin_C; Ferlin C-terminus
  2. XM_005264584.4XP_005264641.1  dysferlin isoform X1

    Conserved Domains (11) summary
    cd04011
    Location:249358
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:11841312
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:412586
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:16321755
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5134
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:18661997
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:9781034
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:819891
    FerB; FerB (NUC096) domain
    pfam08151
    Location:356406
    FerI; FerI (NUC094) domain
    pfam08165
    Location:730787
    FerA; FerA (NUC095) domain
    pfam16165
    Location:20102096
    Ferlin_C; Ferlin C-terminus

RNA

  1. XR_001738969.1 RNA Sequence

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