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FBA5 Aldolase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828759, updated on 7-Sep-2023

Summary

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Gene symbol
FBA5
Gene description
Aldolase superfamily protein
Primary source
Araport:AT4G26530
Locus tag
AT4G26530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtFBA5; fructose-bisphosphate aldolase 5; M3E9.40; M3E9_40
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (13390754..13393265)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene chloroplast sulfur E Neighboring gene uridine kinase-like 4 Neighboring gene Aldolase superfamily protein Neighboring gene Leucine-rich repeat receptor-like protein kinase family protein Neighboring gene ncRNA Neighboring gene Got1/Sft2-like vescicle transport protein family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide transcriptome profiling of the early cadmium response of Arabidopsis roots and shoots. Herbette S, et al. Biochimie, 2006 Nov. PMID 16797112
  2. New targets of Arabidopsis thioredoxins revealed by proteomic analysis. Marchand C, et al. Proteomics, 2004 Sep. PMID 15352244
  3. Regulation of plant cytosolic aldolase functions by redox-modifications. van der Linde K, et al. Plant Physiol Biochem, 2011 Sep. PMID 21782461
  4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036644.2
NM_118786.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables fructose-bisphosphate aldolase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables fructose-bisphosphate aldolase activity NAS
Non-traceable Author Statement
more info
 PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
  
involved_in glycolytic process ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
Aldolase superfamily protein
NP_001031721.1
  • Aldolase superfamily protein; FUNCTIONS IN: fructose-bisphosphate aldolase activity; INVOLVED IN: glycolysis, metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT4G26520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_194383.1
  • Aldolase superfamily protein; FUNCTIONS IN: fructose-bisphosphate aldolase activity; INVOLVED IN: glycolysis, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT4G26520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13390754..13393265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341809.1 → NP_001328708.1  Aldolase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65581
    UniProtKB/TrEMBL
    A0A178V385, A0A5S9XW34
    Conserved Domains (1) summary
    PLN02455
    Location:1 → 358
    PLN02455; fructose-bisphosphate aldolase

  2. NM_001036644.2 → NP_001031721.1  Aldolase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031721.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65581
    UniProtKB/TrEMBL
    A0A178V385, A0A5S9XW34
    Conserved Domains (1) summary
    PLN02455
    Location:1 → 358
    PLN02455; fructose-bisphosphate aldolase

  3. NM_118786.3 → NP_194383.1  Aldolase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194383.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65581
    UniProtKB/TrEMBL
    A0A178V385, A0A5S9XW34
    Conserved Domains (1) summary
    PLN02455
    Location:1 → 358
    PLN02455; fructose-bisphosphate aldolase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O65581.1

Gene LinkOut

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