U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CBS domain protein with a domain protein (DUF21) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827065, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
CBS domain protein with a domain protein (DUF21)
Primary source
TAIR:AT4G14240
Locus tag
AT4G14240
See related
Araport:AT4G14240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3160C; FCAALL.149
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
12
Sequence:
Chromosome: 4; NC_003075.7 (8204347..8207483, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene CBS domain protein with a domain protein (DUF21) Neighboring gene structural constituent of ribosome protein Neighboring gene structural constituent of ribosome protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A tonoplast-localized magnesium transporter is crucial for stomatal opening in Arabidopsis under high Mg(2+) conditions. Inoue SI, et al. New Phytol, 2022 Nov. PMID 35976788, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_001036556.2
NM_001340909.1
NM_117501.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables magnesium ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in magnesium ion homeostasis IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of stomatal opening IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type vacuole membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
CBS domain protein with a domain protein (DUF21)
NP_001031633.2
  • CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT4G14230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_193160.3
  • CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT4G14230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8204347..8207483 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117501.5 → NP_193160.3  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193160.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23282, Q66GK0, Q67XQ0, Q680W1
    UniProtKB/TrEMBL
    A0A178V1F1, A0A5S9XSF6
    Conserved Domains (1) summary
    COG1253
    Location:44 → 428
    TlyC; Hemolysin or related protein, contains CBS domains [General function prediction only]

  2. NM_001036556.2 → NP_001031633.2  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031633.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q67XQ0
    Conserved Domains (2) summary
    cd04590
    Location:230 → 407
    CBS_pair_CorC_HlyC_assoc; This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in ...
    pfam01595
    Location:37 → 204
    DUF21; Domain of unknown function DUF21

  3. NM_001340909.1 → NP_001328231.1  CBS domain protein with a domain protein (DUF21) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B407
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q67XQ0.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools