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Phototropic-responsive NPH3 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824248, updated on 18-Sep-2024

Summary

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Official Full Name
Phototropic-responsive NPH3 family protein
Primary source
TAIR:AT3G50840
Locus tag
AT3G50840
See related
Araport:AT3G50840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (18896129..18898680, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cold-regulated 413-plasma membrane 2 Neighboring gene tRNA-Val Neighboring gene MIP18 family protein (DUF59) Neighboring gene Putative methyltransferase family protein Neighboring gene Clathrin adaptor complex small chain family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001339485.1
NM_114944.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Phototropic-responsive NPH3 family protein
NP_190653.2
  • Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G66560.1); Has 881 Blast hits to 860 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 3; Plants - 864; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    18896129..18898680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339484.1 → NP_001327410.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LS86, A0A7G2ESV2

  2. NM_114944.6 → NP_190653.2  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190653.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4J211, Q8LPQ3, Q9SVL5
    UniProtKB/TrEMBL
    A0A178VJJ0, A0A5S9XJN1, A0A654FEN5
    Conserved Domains (2) summary
    cl38908
    Location:11 → 114
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam03000
    Location:194 → 435
    NPH3; NPH3 family

  3. NM_001339485.1 → NP_001327409.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LS86, A0A7G2ESV2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LPQ3.2

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