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Peroxidase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824158, updated on 18-Sep-2024

Summary

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Official Full Name
Peroxidase superfamily protein
Primary source
TAIR:AT3G49960
Locus tag
AT3G49960
See related
Araport:AT3G49960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
Its expression is enriched in root hair cells (compared to non-root hair cells) and this enrichment is associated with increase in the transcription-associated mark trimethylation of H3 lysine 4 (H3K4me3) and decrease in the Polycomb silencing-associated mark trimethylation of H3 lysine 27 (H3K27me3) in root hair cells relative to non-root hair cells.
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (18524084..18525792, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene GRAS family transcription factor Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene F-box and associated interaction domains-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_114856.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
  
enables lactoperoxidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Peroxidase superfamily protein
NP_190565.1
  • Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: root hair specific 19 (TAIR:AT5G67400.1); Has 4501 Blast hits to 4474 proteins in 294 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 165; Plants - 4270; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    18524084..18525792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114856.3 → NP_190565.1  Peroxidase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190565.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q96510
    UniProtKB/TrEMBL
    A0A178VB34, A0A5S9XJQ5, A0A654FEF0, Q0WTI3
    Conserved Domains (2) summary
    cd00693
    Location:26 → 328
    secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases
    PLN03030
    Location:1 → 329
    PLN03030; cationic peroxidase; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q96510.1

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