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UBC13 ubiquitin-conjugating enzyme 13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823796, updated on 18-Sep-2024

Summary

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Official Symbol
UBC13
Official Full Name
ubiquitin-conjugating enzyme 13
Primary source
TAIR:AT3G46460
Locus tag
AT3G46460
See related
Araport:AT3G46460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ubiquitin-conjugating enzyme 13
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (17095706..17097465, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ATP synthase Neighboring gene UDP-XYL synthase 5 Neighboring gene SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Coordinated regulation of plant immunity by poly(ADP-ribosyl)ation and K63-linked ubiquitination. Yao D, et al. Mol Plant, 2021 Dec 6. PMID 34418551, Free PMC Article
  2. Arabidopsis OTU1, a linkage-specific deubiquitinase, is required for endoplasmic reticulum-associated protein degradation. Zang Y, et al. Plant J, 2020 Jan. PMID 31491807
  3. Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. Kraft E, et al. Plant Physiol, 2005 Dec. PMID 16339806, Free PMC Article
  4. Protein degradation in signaling. Callis J, et al. Curr Opin Plant Biol, 2000 Oct. PMID 11019805
  5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Coordinated regulation of plant immunity by poly(ADP-ribosyl)ation and K63-linked ubiquitination.
    Title: Coordinated regulation of plant immunity by poly(ADP-ribosyl)ation and K63-linked ubiquitination.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001339250.1
NM_001339251.1
NM_114513.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ubiquitin conjugating enzyme activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ubiquitin-conjugating enzyme 13
NP_566884.1
  • ubiquitin-conjugating enzyme 13 (UBC13); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin carrier protein 7 (TAIR:AT5G59300.1); Has 10290 Blast hits to 10255 proteins in 396 species: Archae - 0; Bacteria - 0; Metazoa - 4390; Fungi - 2251; Plants - 1992; Viruses - 23; Other Eukaryotes - 1634 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    17095706..17097465 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114513.6 → NP_566884.1  ubiquitin-conjugating enzyme 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566884.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q42541, Q4TYZ7
    UniProtKB/TrEMBL
    A0A178V960, A0A5S9XIH4
    Conserved Domains (1) summary
    pfam00179
    Location:18 → 159
    UQ_con; Ubiquitin-conjugating enzyme

  2. NM_001339250.1 → NP_001325532.1  ubiquitin-conjugating enzyme 13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UTL7, A0A1I9LLI9, A0A5S9YG47

  3. NM_001339251.1 → NP_001325533.1  ubiquitin-conjugating enzyme 13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UTL7, A0A1I9LLI9, A0A5S9YG47
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q42541.1

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