U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SWIB/MDM2 domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820093, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
SWIB/MDM2 domain superfamily protein
Primary source
TAIR:AT3G01890
Locus tag
AT3G01890
See related
Araport:AT3G01890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1C9.33; F1C9_33
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (310007..312073)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF946) Neighboring gene vacuolar sorting-associated protein (DUF946) Neighboring gene cytochrome P450, family 94, subfamily B, polypeptide 2 Neighboring gene sulfite oxidase Neighboring gene DHBP synthase RibB-like alpha/beta domain-containing protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Sacharowski SP, et al. Plant Cell, 2015 Jul. PMID 26106148, Free PMC Article
  2. AtEAF1 is a potential platform protein for Arabidopsis NuA4 acetyltransferase complex. Bieluszewski T, et al. BMC Plant Biol, 2015 Mar 5. PMID 25849764, Free PMC Article
  3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SWP73B acts as important modulator of major developmental pathways, while SWP73A functions in flowering time control.
    Title: SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_111055.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of flower development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
SWIB/MDM2 domain superfamily protein
NP_566154.2
  • SWIB/MDM2 domain superfamily protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT5G14170.1); Has 893 Blast hits to 865 proteins in 236 species: Archae - 0; Bacteria - 105; Metazoa - 289; Fungi - 279; Plants - 159; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    310007..312073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111055.4 → NP_566154.2  SWIB/MDM2 domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566154.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VE35, A0A5S9X9A9, Q147F4, Q8GW71
    Conserved Domains (1) summary
    cd10568
    Location:253 → 320
    SWIB_like; SWIB domain found in the 60 kda subunit of the ATP-dependent SWI/SNF chromatin-remodeling complexes and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools