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AHG11 Pentatricopeptide repeat (PPR-like) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819097, updated on 18-Sep-2024

Summary

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Official Symbol
AHG11
Official Full Name
Pentatricopeptide repeat (PPR-like) superfamily protein
Primary source
TAIR:AT2G44880
Locus tag
AT2G44880
See related
Araport:AT2G44880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ABA hypersensitive germination 11; T13E15.11
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Genomic context

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See AHG11 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (18505101..18508298)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L24e family protein Neighboring gene ncRNA Neighboring gene replicase polyprotein 1ab protein Neighboring gene ncRNA Neighboring gene cytochrome P450, family 704, subfamily A, polypeptide 1 Neighboring gene ARABIDILLO-1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation of Arabidopsis ahg11, a weak ABA hypersensitive mutant defective in nad4 RNA editing. Murayama M, et al. J Exp Bot, 2012 Sep. PMID 22821940, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR-like) superfamily protein
NP_182015.1
  • Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G29230.1); Has 36784 Blast hits to 13843 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 10; Fungi - 56; Plants - 36313; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18505101..18508298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337101.1 → NP_001324546.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B0G8, A0A5S9X722

  2. NM_001337102.1 → NP_001324542.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B0J3, A0A5S9X722

  3. NM_001337103.1 → NP_001324545.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B0J3, A0A5S9X722

  4. NM_001337104.1 → NP_001324544.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B0F9, A0A5S9X722

  5. NM_001337105.1 → NP_001324543.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B0G9, A0A5S9X722

  6. NM_130052.2 → NP_182015.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_182015.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22163, Q1PEU4
    UniProtKB/TrEMBL
    A0A5S9X722
    Conserved Domains (5) summary
    sd00004
    Location:146 → 173
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:239 → 265
    PPR; PPR repeat
    pfam12854
    Location:206 → 234
    PPR_1; PPR repeat
    pfam13041
    Location:174 → 219
    PPR_2; PPR repeat family
    pfam14432
    Location:511 → 553
    DYW_deaminase; DYW family of nucleic acid deaminases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q1PEU4.2

Gene LinkOut

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