U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ARI7 IBR domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817709, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ARI7
Official Full Name
IBR domain-containing protein
Primary source
TAIR:AT2G31510
Locus tag
AT2G31510
See related
Araport:AT2G31510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS ARIADNE 7; ARIADNE 7; ATARI7; T9H9.3; T9H9_3
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
15
Sequence:
Chromosome: 2; NC_003071.7 (13416551..13421571, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene neuronal acetylcholine receptor subunit alpha-5 Neighboring gene calcium-dependent protein kinase 24 Neighboring gene pseudo Neighboring gene SecY protein transport family protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_001336334.1
NM_001336335.1
NM_128708.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
IBR domain-containing protein
NP_180709.3
  • ARIADNE 7 (ARI7); FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G05890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13416551..13421571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128708.5 → NP_180709.3  IBR domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180709.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84RR0, Q9SIQ6
    UniProtKB/TrEMBL
    A0A178VXL6, A0A5S9X2X3, A0A7G2EDJ5
    Conserved Domains (3) summary
    smart00647
    Location:206 → 268
    IBR; In Between Ring fingers
    cd16623
    Location:137 → 187
    RING-HC_RBR_TRIAD1_like; RING finger, HC subclass, found in two RING fingers and DRIL [double RING finger linked] 1 (TRIAD1), ankyrin repeat and IBR domain-containing protein 1 (ANKIB1) and similar proteins
    pfam01485
    Location:290 → 329
    IBR; IBR domain, a half RING-finger domain

  2. NM_001336334.1 → NP_001324416.1  IBR domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B027, A0A7G2EDJ5
    Conserved Domains (3) summary
    smart00647
    Location:206 → 268
    IBR; In Between Ring fingers
    cd16623
    Location:137 → 187
    RING-HC_RBR_TRIAD1_like; RING finger, HC subclass, found in two RING fingers and DRIL [double RING finger linked] 1 (TRIAD1), ankyrin repeat and IBR domain-containing protein 1 (ANKIB1) and similar proteins
    pfam01485
    Location:290 → 329
    IBR; IBR domain, a half RING-finger domain

  3. NM_001336335.1 → NP_001324417.1  IBR domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B029, A0A7G2EDJ5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84RR0.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools