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P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816180, updated on 18-Sep-2024

Summary

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Official Full Name
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Primary source
TAIR:AT2G16790
Locus tag
AT2G16790
See related
Araport:AT2G16790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T24I21.20; T24I21_20
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (7283928..7285345, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Calcium-dependent phosphotriesterase superfamily protein Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene Transducin family protein / WD-40 repeat family protein Neighboring gene high-affinity nickel-transport family protein Neighboring gene F-box and associated interaction domains-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001124859.1
NM_001335491.1
NM_001335492.1
NM_127231.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables gluconokinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in D-gluconate catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
P-loop containing nucleoside triphosphate hydrolases superfamily protein
NP_001118331.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: shikimate kinase activity, kinase activity, ATP binding; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623), Carbohydrate kinase, thermoresistant glucokinase (InterPro:IPR006001); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_565393.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: shikimate kinase activity, kinase activity, ATP binding; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623), Carbohydrate kinase, thermoresistant glucokinase (InterPro:IPR006001); Has 2254 Blast hits to 2254 proteins in 918 species: Archae - 9; Bacteria - 1822; Metazoa - 57; Fungi - 155; Plants - 35; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7283928..7285345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335490.1 → NP_001325318.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B2T4, A0A7G2ECR7

  2. NM_127231.2 → NP_565393.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565393.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LDN6, Q9SLE0
    UniProtKB/TrEMBL
    A0A7G2ECR7
    Conserved Domains (1) summary
    COG3265
    Location:15 → 185
    GntK; Gluconate kinase [Carbohydrate transport and metabolism]

  3. NM_001124859.1 → NP_001118331.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118331.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2ECR7, B3H6H9
    Conserved Domains (2) summary
    COG0703
    Location:10 → 187
    AroK; Shikimate kinase [Amino acid transport and metabolism]
    COG3265
    Location:13 → 183
    GntK; Gluconate kinase [Carbohydrate transport and metabolism]

  4. NM_001335492.1 → NP_001325317.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LDN6, Q9SLE0
    UniProtKB/TrEMBL
    A0A7G2ECR7
    Conserved Domains (1) summary
    COG3265
    Location:15 → 185
    GntK; Gluconate kinase [Carbohydrate transport and metabolism]

  5. NM_001335491.1 → NP_001325316.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B2W6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SLE0.2

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