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Trim44 tripartite motif-containing 44 [ Mus musculus (house mouse) ]

Gene ID: 80985, updated on 8-Feb-2024

Summary

Official Symbol
Trim44provided by MGI
Official Full Name
tripartite motif-containing 44provided by MGI
Primary source
MGI:MGI:1931835
See related
Ensembl:ENSMUSG00000027189 AllianceGenome:MGI:1931835
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mc7; Dipb
Summary
Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including negative regulation of protein K48-linked ubiquitination; positive regulation of defense response to virus by host; and positive regulation of signal transduction. Predicted to be active in cytoplasm. Is expressed in central nervous system; genitourinary system; and retina. Human ortholog(s) of this gene implicated in aniridia. Orthologous to human TRIM44 (tripartite motif containing 44). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in frontal lobe adult (RPKM 39.5), CNS E18 (RPKM 31.5) and 27 other tissues See more
Orthologs
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Genomic context

See Trim44 in Genome Data Viewer
Location:
2 E2; 2 54.13 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (102130464..102231541, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (102300119..102400900, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene 13866 Neighboring gene predicted gene, 34268 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:102099355-102099721 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:102099850-102100051 Neighboring gene STARR-positive B cell enhancer ABC_E11148 Neighboring gene STARR-seq mESC enhancer starr_05250 Neighboring gene 60S ribosomal protein L37 pseudogene Neighboring gene predicted gene, 52521 Neighboring gene STARR-positive B cell enhancer ABC_E3386 Neighboring gene STARR-seq mESC enhancer starr_05251 Neighboring gene STARR-seq mESC enhancer starr_05252 Neighboring gene predicted gene, 39890 Neighboring gene four jointed box 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Clone Names

  • MGC102054

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
tripartite motif-containing protein 44
Names
DIPB
brain cDNA 7
protein Mc7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020267.3NP_064663.2  tripartite motif-containing protein 44

    See identical proteins and their annotated locations for NP_064663.2

    Status: VALIDATED

    Source sequence(s)
    AL691444
    Consensus CDS
    CCDS16466.1
    UniProtKB/Swiss-Prot
    Q80SV9, Q9JHR8, Q9QXA7
    UniProtKB/TrEMBL
    Q4KMS1
    Related
    ENSMUSP00000099633.2, ENSMUST00000102573.8
    Conserved Domains (1) summary
    pfam00643
    Location:177216
    zf-B_box; B-box zinc finger

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    102130464..102231541 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_029448.1: Suppressed sequence

    Description
    NM_029448.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.