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LOC8084799 coatomer subunit delta-2 [ Sorghum bicolor (sorghum) ]

Gene ID: 8084799, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8084799
Gene description
coatomer subunit delta-2
Locus tag
SORBI_3008G072200
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 8 NC_012877.2 (9715408..9721539, complement)

Chromosome 8 - NC_012877.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8082814 Neighboring gene putative disease resistance protein RGA3 Neighboring gene uncharacterized LOC8084798 Neighboring gene pentatricopeptide repeat-containing protein At1g71460, chloroplastic Neighboring gene probable serine/threonine-protein kinase At1g09600

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012877.2 Chromosome 8 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coatomer subunit delta-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012877.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    9715408..9721539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002442972.2 → XP_002443017.1  coatomer subunit delta-2

    See identical proteins and their annotated locations for XP_002443017.1

    UniProtKB/TrEMBL
    A0A921QHF6, C5YTK4
    Conserved Domains (2) summary
    cd09254
    Location:282 → 519
    AP_delta-COPI_MHD; Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit
    cd14830
    Location:4 → 133
    Delta_COP_N; delta subunit of the F-COPI complex, N-terminal domain
Nucleotide Protein
Heading Accession and Version

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