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Sorghum_bicolor_NCBIv3

Organism name:
Sorghum bicolor (sorghum)
Infraspecific name:
Cultivar: BTx623
BioSample:
SAMN02953738
BioProject:
PRJNA13876
Submitter:
Sorghum Consortium
Date:
2017/04/07
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000003195.3 (latest)
RefSeq assembly accession:
GCF_000003195.3 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosomes MT and Pltd (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
ABXC03
Assembly method:
ARACHNE_modified v. 200721016
Genome coverage:
8x
Sequencing technology:
Sanger; Illumina

IDs: 1063861 [UID] 4345258 [GenBank] 4534198 [RefSeq]

See Genome Information for Sorghum bicolor

There are 9 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length709,344,700
Total ungapped length675,973,270
Gaps between scaffolds0
Number of scaffolds869
Scaffold N5068,658,214
Scaffold L505
Number of contigs4,775
Contig N501,310,030
Contig L5078
Total number of chromosomes and plasmids12
Number of component sequences (WGS or clone)4,775

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000001605.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000760.3=NC_012870.20
Chromosome 2CM000761.3=NC_012871.20
Chromosome 3CM000762.3=NC_012872.20
Chromosome 4CM000763.3=NC_012873.20
Chromosome 5CM000764.3=NC_012874.20
Chromosome 6CM000765.3=NC_012875.20
Chromosome 7CM000766.3=NC_012876.20
Chromosome 8CM000767.3=NC_012877.20
Chromosome 9CM000768.3=NC_012878.20
Chromosome 10CM000769.3=NC_012879.20
unplacedn/an/an/a857

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All708,735,318867675,363,88868,658,2143,9060
Chromosome 180,884,392175,935,42780,884,3921480
Chromosome 277,742,459177,039,81777,742,4593260
Chromosome 374,386,277173,516,26874,386,2772520
Chromosome 468,658,214164,197,24168,658,2141520
Chromosome 571,854,669169,124,58471,854,6693760
Chromosome 661,277,060160,489,50761,277,0604130
Chromosome 765,505,356161,711,07765,505,3561880
Chromosome 862,686,529159,583,41862,686,5293330
Chromosome 959,416,394155,848,69259,416,3942430
Chromosome 1061,233,695157,760,08661,233,6952480
unplaced25,090,27385720,157,771236,4931,2270
MoleculeTotal
Length
All609,382
Mitochondrion MT468,628
Chloroplast Pltd140,754
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