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LOC8078079 D-amino-acid transaminase, chloroplastic [ Sorghum bicolor (sorghum) ]

Gene ID: 8078079, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8078079
Gene description
D-amino-acid transaminase, chloroplastic
Locus tag
SORBI_3003G003200
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (326999..328944, complement)

Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene probable metal-nicotianamine transporter YSL1 Neighboring gene uncharacterized protein At4g28440 Neighboring gene uncharacterized LOC8078080 Neighboring gene probable 2-carboxy-D-arabinitol-1-phosphatase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-amino-4-deoxychorismate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in folic acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
D-amino-acid transaminase, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    326999..328944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021456624.1 → XP_021312299.1  D-amino-acid transaminase, chloroplastic isoform X2

    UniProtKB/TrEMBL
    A0A921RB15, C5XJI9
    Conserved Domains (1) summary
    PLN02845
    Location:1 → 311
    PLN02845; Branched-chain-amino-acid aminotransferase-like protein

  2. XM_002457003.2 → XP_002457048.1  D-amino-acid transaminase, chloroplastic isoform X1

    See identical proteins and their annotated locations for XP_002457048.1

    UniProtKB/TrEMBL
    A0A921RB15, C5XJI9
    Conserved Domains (1) summary
    PLN02845
    Location:1 → 335
    PLN02845; Branched-chain-amino-acid aminotransferase-like protein
Nucleotide Protein
Heading Accession and Version

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