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GOLGA2P10 GOLGA2 pseudogene 10 [ Homo sapiens (human) ]

Gene ID: 80154, updated on 17-Jun-2024

Summary

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Official Symbol
GOLGA2P10provided by HGNC
Official Full Name
GOLGA2 pseudogene 10provided by HGNC
Primary source
HGNC:HGNC:26229
See related
AllianceGenome:HGNC:26229
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in prostate (RPKM 27.2), stomach (RPKM 24.8) and 22 other tissues See more
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Genomic context

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See GOLGA2P10 in Genome Data Viewer
Location:
15q25.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (82471477..82513999, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (80335605..80378148, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (83140199..83182977, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene UBE2Q2 pseudogene 6 Neighboring gene hESC enhancers GRCh37_chr15:82988342-82989330 and GRCh37_chr15:83127113-83127972 Neighboring gene chondroitin sulfate proteoglycan 4 pseudogene 10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:83137289-83137789 Neighboring gene uncharacterized LOC105370926 Neighboring gene golgin A6 family like 17, pseudogene Neighboring gene dynamin 1 pseudogene 38

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. mRNA expression of AgSK1, an adenocarconoma-associated antigen, in tumor tissue of patients with colorectal cancer: Quantitative RT-PCR analysis. Yokoyama K, et al. Hum Antibodies, 2003. PMID 15156102
  2. Identification of the immunoreactive peptide sequence for AgSK1, an adenocarcinoma-restricted antigen. Yasutomi J, et al. Tissue Antigens, 2000 Feb. PMID 10746788
  3. AgSK1, a novel carcinoma associated antigen. Chang HR, et al. Cancer Res, 1993 Mar 1. PMID 8439957
  4. Systematic identification of pathological lamin A interactors. Dittmer TA, et al. Mol Biol Cell, 2014 May. PMID 24623722, Free PMC Article
  5. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Other Names

  • antigen SK1, colon cancer-associated
  • golgin A2 pseudogene 10
  • golgin subfamily A member 2-like

Clone Names

  • FLJ17811, FLJ18166, FLJ22795, FLJ90297, FLJ99461, FLJ99773

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026811.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) includes an additional internal exon in the 5' region, and uses an alternate splice site in the 3' terminal exon, compared to variant 2.
    Source sequence(s)
    BC065260, BM981202, BQ232584, DB070142

  2. NR_033936.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents the longest transcript.
    Source sequence(s)
    AC245033, AK309732, BC065260, BM981202, BQ232584, DB070142

  3. NR_103496.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses alternate splice sites in both the 5' and 3' terminal exons, compared to variant 2.
    Source sequence(s)
    AK310769, BC065260, BM981202, BQ232584, DB070142

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    82471477..82513999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187606.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    260554..303332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    80335605..80378148 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_025084.1: Suppressed sequence

    Description
    NM_025084.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein
Heading Accession and Version

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