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GOLGA2P10 GOLGA2 pseudogene 10 [ Homo sapiens (human) ]

Gene ID: 80154, updated on 1-Jun-2020

Summary

Official Symbol
GOLGA2P10provided by HGNC
Official Full Name
GOLGA2 pseudogene 10provided by HGNC
Primary source
HGNC:HGNC:26229
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in prostate (RPKM 27.2), stomach (RPKM 24.8) and 22 other tissues See more

Genomic context

See GOLGA2P10 in Genome Data Viewer
Location:
15q25.2
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (82471477..82513999, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (82763613..82798352, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ubiquitin conjugating enzyme E2 Q2 pseudogene 6 Neighboring gene chondroitin sulfate proteoglycan 4 pseudogene 10 Neighboring gene uncharacterized LOC105370926 Neighboring gene golgin A6 family like 17, pseudogene Neighboring gene dynamin 1 pseudogene 38

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • antigen SK1, colon cancer-associated
  • golgin A2 pseudogene 10
  • golgin subfamily A member 2-like

Clone Names

  • FLJ17811, FLJ18166, FLJ22795, FLJ90297, FLJ99461, FLJ99773

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026811.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) includes an additional internal exon in the 5' region, and uses an alternate splice site in the 3' terminal exon, compared to variant 2.
    Source sequence(s)
    BC065260, BM981202, BQ232584, DB070142
  2. NR_033936.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents the longest transcript.
    Source sequence(s)
    AC245033, AK309732, BC065260, BM981202, BQ232584, DB070142
  3. NR_103496.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses alternate splice sites in both the 5' and 3' terminal exons, compared to variant 2.
    Source sequence(s)
    AK310769, BC065260, BM981202, BQ232584, DB070142

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    82471477..82513999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187606.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    260554..303332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_025084.1: Suppressed sequence

    Description
    NM_025084.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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