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C19orf57 chromosome 19 open reading frame 57 [ Homo sapiens (human) ]

Gene ID: 79173, updated on 8-Oct-2017
Official Symbol
C19orf57provided by HGNC
Official Full Name
chromosome 19 open reading frame 57provided by HGNC
Primary source
HGNC:HGNC:28153
See related
Ensembl:ENSG00000132016 Vega:OTTHUMG00000181851
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
Location:
19p13.12
Exon count:
10
Annotation release Status Assembly Chr Location
108 current GRCh38.p7 (GCF_000001405.33) 19 NC_000019.10 (13882348..13906125, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (13993168..14016909, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene microRNA 181d Neighboring gene nanos C2HC-type zinc finger 3 Neighboring gene coiled-coil and C2 domain containing 1A Neighboring gene podocan like 1 Neighboring gene DDB1 and CUL4 associated factor 15

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC11271, MGC149720

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
multicellular organism development NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
Preferred Names
uncharacterized protein C19orf57
Names
pre-T/NK cell associated protein (3B3)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001345843.1NP_001332772.1  uncharacterized protein C19orf57 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AC020916
  2. NM_001345844.1NP_001332773.1  uncharacterized protein C19orf57 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AC020916
  3. NM_001345846.1NP_001332775.1  uncharacterized protein C19orf57 isoform 4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (4) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AC020916
  4. NM_001345847.1NP_001332776.1  uncharacterized protein C19orf57 isoform 5

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR and coding sequence and lacks an alternate in-frame exon compared to variant 1. The resulting isoform (5) is shorter at the N-terminus and lacks an alternate segment in the C-terminus compared to isoform 1.
    Source sequence(s)
    AC020916
  5. NM_001345848.1NP_001332777.1  uncharacterized protein C19orf57 isoform 6

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (6) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AC020916
  6. NM_024323.4NP_077299.3  uncharacterized protein C19orf57 isoform 3

    See identical proteins and their annotated locations for NP_077299.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence and lacks an alternate in-frame exon compared to variant 1. The resulting isoform (3) is shorter at the N-terminus and lacks an alternate segment in the C-terminus compared to isoform 1.
    Source sequence(s)
    AK097431, BI761493, BU621615
    Consensus CDS
    CCDS12299.1
    UniProtKB/Swiss-Prot
    Q0VDD7
    Related
    ENSP00000254336.1, OTTHUMP00000267663, ENST00000346736.6, OTTHUMT00000457948
    Conserved Domains (1) summary
    pfam15710
    Location:1637
    DUF4671; Domain of unknown function (DUF4671)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p7 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p7 Primary Assembly

    Range
    13882348..13906125 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006722885.3XP_006722948.2  uncharacterized protein C19orf57 isoform X1

  2. XM_017027300.1XP_016882789.1  uncharacterized protein C19orf57 isoform X3

  3. XM_017027301.1XP_016882790.1  uncharacterized protein C19orf57 isoform X4

  4. XM_011528287.2XP_011526589.1  uncharacterized protein C19orf57 isoform X2

    See identical proteins and their annotated locations for XP_011526589.1

    Conserved Domains (1) summary
    pfam15710
    Location:1470
    DUF4671; Domain of unknown function (DUF4671)
  5. XM_011528286.2XP_011526588.1  uncharacterized protein C19orf57 isoform X2

    See identical proteins and their annotated locations for XP_011526588.1

    Conserved Domains (1) summary
    pfam15710
    Location:1470
    DUF4671; Domain of unknown function (DUF4671)

Alternate CHM1_1.1

Genomic

  1. NC_018930.2 Alternate CHM1_1.1

    Range
    13993865..14017617 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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