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trappc12 trafficking protein particle complex subunit 12 [ Danio rerio (zebrafish) ]

Gene ID: 791162, updated on 12-Sep-2024

Summary

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Official Symbol
trappc12provided by ZNC
Official Full Name
trafficking protein particle complex subunit 12provided by ZNC
Primary source
ZFIN:ZDB-GENE-070112-1282
See related
Ensembl:ENSDARG00000060101 AllianceGenome:ZFIN:ZDB-GENE-070112-1282
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ttc15; zgc:158466
Summary
Predicted to be part of TRAPP complex. Predicted to be active in Golgi apparatus. Orthologous to human TRAPPC12 (trafficking protein particle complex subunit 12). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (51231208..51262430, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (51143264..51173400, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene presenilin 1 Neighboring gene acireductone dioxygenase 1 Neighboring gene EARP complex and GARP complex interacting protein 1 Neighboring gene myelin transcription factor 1-like, b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of TRAPP complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
trafficking protein particle complex subunit 12
Names
tetratricopeptide repeat domain 15
trafficking protein particle complex 12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080644.2 → NP_001074113.2  trafficking protein particle complex subunit 12

    Status: VALIDATED

    Source sequence(s)
    CABZ01067329, CABZ01067330, CABZ01067331, CU634006
    UniProtKB/TrEMBL
    A0A0R4IDK0, A0A8M1ND00, F1RE04
    Related
    ENSDARP00000131230.2, ENSDART00000163222.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    51231208..51262430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005169884.5 → XP_005169941.1  trafficking protein particle complex subunit 12 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BH42
    Conserved Domains (4) summary
    sd00006
    Location:602 → 637
    TPR; TPR repeat [structural motif]
    pfam07719
    Location:645 → 676
    TPR_2; Tetratricopeptide repeat
    pfam13414
    Location:645 → 708
    TPR_11; TPR repeat
    pfam13424
    Location:568 → 634
    TPR_12; Tetratricopeptide repeat

  2. XM_068214463.1 → XP_068070564.1  trafficking protein particle complex subunit 12 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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