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map7d1 MAP7 domain containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 779451, updated on 17-Aug-2024

Summary

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Official Symbol
map7d1provided by Xenbase
Official Full Name
MAP7 domain containing 1provided by Xenbase
Primary source
Xenbase:XB-GENE-6454138
See related
Ensembl:ENSXETG00000004382
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
rprc1; parcc1
Orthologs
human mouse all
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Genomic context

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See map7d1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (81250462..81317641, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (55496012..55560426, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene SH3 domain containing 21 Neighboring gene thyroid hormone receptor associated protein 3 Neighboring gene uncharacterized LOC116408846 Neighboring gene probable beta-D-xylosidase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
MAP7 domain-containing protein 1
Names
proline arginine rich coiled coil 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    81250462..81317641 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031896899.1 → XP_031752759.1  MAP7 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8J1J4F2, F7CQ81, F7CX97
    Related
    ENSXETP00000051290.5, ENSXETT00000051290.5
    Conserved Domains (4) summary
    PTZ00108
    Location:183 → 435
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    pfam05109
    Location:412 → 632
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam17380
    Location:182 → 270
    DUF5401; Family of unknown function (DUF5401)
    pfam05672
    Location:618 → 784
    MAP7; MAP7 (E-MAP-115) family

  2. XM_002936218.4 → XP_002936264.2  MAP7 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A803KD81, F7CXB2
    Related
    ENSXETP00000009555.5, ENSXETT00000009555.5
    Conserved Domains (4) summary
    PTZ00108
    Location:732 → 921
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    pfam05109
    Location:449 → 669
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam17380
    Location:182 → 270
    DUF5401; Family of unknown function (DUF5401)
    pfam05672
    Location:655 → 821
    MAP7; MAP7 (E-MAP-115) family
Nucleotide Protein Strain
Heading Accession and Version

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