Format

Send to:

Choose Destination

CACNA1E calcium voltage-gated channel subunit alpha1 E [ Homo sapiens (human) ]

Gene ID: 777, updated on 1-Jun-2020

Summary

Official Symbol
CACNA1Eprovided by HGNC
Official Full Name
calcium voltage-gated channel subunit alpha1 Eprovided by HGNC
Primary source
HGNC:HGNC:1392
See related
Ensembl:ENSG00000198216 MIM:601013
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BII; CACH6; gm139; Cav2.3; EIEE69; CACNL1A6
Summary
Voltage-dependent calcium channels are multisubunit complexes consisting of alpha-1, alpha-2, beta, and delta subunits in a 1:1:1:1 ratio. These channels mediate the entry of calcium ions into excitable cells, and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. This gene encodes the alpha-1E subunit of the R-type calcium channels, which belong to the 'high-voltage activated' group that maybe involved in the modulation of firing patterns of neurons important for information processing. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Apr 2011]
Expression
Biased expression in brain (RPKM 3.3), adrenal (RPKM 0.4) and 2 other tissues See more
Orthologs

Genomic context

See CACNA1E in Genome Data Viewer
Location:
1q25.3
Exon count:
52
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (181317712..181808084)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (181452447..181775920)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1699 Neighboring gene uncharacterized LOC107985454 Neighboring gene uncharacterized LOC107985232 Neighboring gene RNA, 5S ribosomal pseudogene 70 Neighboring gene Sharpr-MPRA regulatory region 5358 Neighboring gene RN7SK pseudogene 229

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
EPILEPTIC ENCEPHALOPATHY, EARLY INFANTILE, 69
MedGen: C4748988 OMIM: 618285 GeneReviews: Not available
Compare labs

NHGRI GWAS Catalog

Description
Genetics of coronary artery calcification among African Americans, a meta-analysis.
NHGRI GWA Catalog
Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
NHGRI GWA Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
voltage-gated calcium channel activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
voltage-gated calcium channel activity IDA
Inferred from Direct Assay
more info
PubMed 
voltage-gated cation channel activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
calcium ion import IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
calcium ion transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
chemical synaptic transmission IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane depolarization TAS
Traceable Author Statement
more info
 
regulation of insulin secretion TAS
Traceable Author Statement
more info
 
regulation of ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
plasma membrane TAS
Traceable Author Statement
more info
 
synapse IEA
Inferred from Electronic Annotation
more info
 
voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
voltage-dependent R-type calcium channel subunit alpha-1E
Names
brain calcium channel II
calcium channel, L type, alpha-1 polypeptide, isoform 6
calcium channel, R type, alpha-1 polypeptide, isoform 6
voltage-dependent calcium channel alpha 1E subunit
voltage-gated calcium channel alpha subunit Cav2.3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_050616.1 RefSeqGene

    Range
    5207..329774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_000721.4NP_000712.2  voltage-dependent R-type calcium channel subunit alpha-1E isoform 3

    See identical proteins and their annotated locations for NP_000712.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) is missing an in-frame coding exon compared to variant 1. This results in a shorter isoform (3, also known as alpha-1E-3) missing an internal protein segment compared to isoform 1.
    Source sequence(s)
    AB209499, AK309070, AL160059, AL161734, BC037800, BP230397, KF510705, L29385
    Consensus CDS
    CCDS53443.1
    UniProtKB/Swiss-Prot
    Q15878
    UniProtKB/TrEMBL
    Q59FG1
    Related
    ENSP00000356542.1, ENST00000367570.5
    Conserved Domains (4) summary
    pfam17069
    Location:19582089
    RSRP; Arginine/Serine-Rich protein 1
    pfam00520
    Location:14771734
    Ion_trans; Ion transport protein
    pfam08763
    Location:18071881
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:17351805
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  2. NM_001205293.3NP_001192222.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform 1

    See identical proteins and their annotated locations for NP_001192222.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript, and encodes the longest isoform (1, also known as alpha-1E).
    Source sequence(s)
    AL160059, AL161734, BP230397, BP230632, KF510705, L27745
    Consensus CDS
    CCDS55664.1
    UniProtKB/Swiss-Prot
    Q15878
    UniProtKB/TrEMBL
    Q59FG1
    Related
    ENSP00000356545.2, ENST00000367573.7
    Conserved Domains (4) summary
    pfam00520
    Location:14771734
    Ion_trans; Ion transport protein
    pfam08763
    Location:18071881
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:17351805
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    cl28033
    Location:19782200
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
  3. NM_001205294.2NP_001192223.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform 2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) is missing two non-consecutive in-frame coding exons compared to variant 1. This results in a shorter isoform (2, also known as alpha-1E-1) missing two internal protein segments compared to isoform 1.
    Source sequence(s)
    AB209499, AK309070, AL160059, AL161734, BC037800, BP230397, KF510705, L29384
    Consensus CDS
    CCDS55665.1
    UniProtKB/Swiss-Prot
    Q15878
    UniProtKB/TrEMBL
    Q59FG1
    Related
    ENSP00000481619.1, ENST00000621791.4
    Conserved Domains (4) summary
    pfam17069
    Location:19392070
    RSRP; Arginine/Serine-Rich protein 1
    pfam00520
    Location:14581715
    Ion_trans; Ion transport protein
    pfam08763
    Location:17881862
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:17161786
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    181317712..181808084
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017002244.1XP_016857733.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X2

  2. XM_017002248.1XP_016857737.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X6

  3. XM_017002246.1XP_016857735.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X4

  4. XM_017002245.1XP_016857734.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X3

  5. XM_017002243.1XP_016857732.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X1

  6. XM_017002249.1XP_016857738.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X7

  7. XM_017002247.1XP_016857736.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X5

  8. XM_017002250.1XP_016857739.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X8

  9. XM_017002251.1XP_016857740.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X1

Support Center