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Ankrd55 ankyrin repeat domain 55 [ Mus musculus (house mouse) ]

Gene ID: 77318, updated on 8-Nov-2022

Summary

Official Symbol
Ankrd55provided by MGI
Official Full Name
ankyrin repeat domain 55provided by MGI
Primary source
MGI:MGI:1924568
See related
Ensembl:ENSMUSG00000049985 AllianceGenome:MGI:1924568
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C030011J08Rik
Summary
Is expressed in limb. Orthologous to human ANKRD55 (ankyrin repeat domain 55). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 1.5), cerebellum adult (RPKM 1.1) and 12 other tissues See more
Orthologs
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Genomic context

See Ankrd55 in Genome Data Viewer
Location:
13; 13 D2.2
Exon count:
17
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (112424985..112523391)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (112288451..112384005)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33849 Neighboring gene predicted gene, 53816 Neighboring gene predicted gene, 41065 Neighboring gene predicted gene, 48837 Neighboring gene predicted gene, 33905 Neighboring gene interleukin 6 signal transducer

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (2) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
ankyrin repeat domain-containing protein 55

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001168403.1NP_001161875.1  ankyrin repeat domain-containing protein 55 isoform 2

    See identical proteins and their annotated locations for NP_001161875.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an additional exon in the 5' region, as compared to variant 1. This results in a downstream AUG start codon and the resulting isoform (2) is shorter at the N-terminus, as compared to isoform 1.
    Source sequence(s)
    AK021066, AK039553, AK045480, AK140417
    Consensus CDS
    CCDS49365.1
    UniProtKB/Swiss-Prot
    Q8BLD6
    UniProtKB/TrEMBL
    E9Q0E9, Q8BYH9
    Related
    ENSMUSP00000126199.2, ENSMUST00000165593.9
    Conserved Domains (2) summary
    PHA03095
    Location:3286
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:6495
    ANK; ANK repeat [structural motif]
  2. NM_001168404.1NP_001161876.1  ankyrin repeat domain-containing protein 55 isoform 3

    See identical proteins and their annotated locations for NP_001161876.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has a split 5' exon and lacks several 3' exons but has an alternate 3' segment, as compared to variant 1. The resulting isoform (3) is much shorter and has a different C-terminus, as compared to isoform 1.
    Source sequence(s)
    AK081197
    Consensus CDS
    CCDS49364.1
    UniProtKB/TrEMBL
    Q8BV14
    Related
    ENSMUSP00000129726.2, ENSMUST00000168684.2
    Conserved Domains (4) summary
    cd00204
    Location:120249
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:97191
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:196249
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:92123
    ANK; ANK repeat [structural motif]
  3. NM_001168405.1NP_001161877.1  ankyrin repeat domain-containing protein 55 isoform 4

    See identical proteins and their annotated locations for NP_001161877.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks multiple 3' exons but has an alternate 3' exon, as compared to variant 1. The resulting isoform (4) is much shorter and has a different C-terminus, as compared to isoform 1.
    Source sequence(s)
    AK039553
    Consensus CDS
    CCDS49363.1
    UniProtKB/TrEMBL
    Q8BYH9
    Related
    ENSMUSP00000058891.8, ENSMUST00000056047.14
    Conserved Domains (3) summary
    cd00204
    Location:33146
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:31123
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:5990
    ANK; ANK repeat [structural motif]
  4. NM_029898.3NP_084174.2  ankyrin repeat domain-containing protein 55 isoform 1

    See identical proteins and their annotated locations for NP_084174.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AK021066, AK039553, AK045480, AK138273, BC152317
    Consensus CDS
    CCDS26772.1
    UniProtKB/Swiss-Prot
    Q8BLD6, Q9CTM6
    UniProtKB/TrEMBL
    A7MCU1, Q8BYH9
    Related
    ENSMUSP00000022275.7, ENSMUST00000022275.14
    Conserved Domains (2) summary
    PHA03095
    Location:20314
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:92123
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    112424985..112523391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036158223.1XP_036014116.1  ankyrin repeat domain-containing protein 55 isoform X3

    Conserved Domains (2) summary
    PHA03095
    Location:20314
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:92123
    ANK; ANK repeat [structural motif]
  2. XM_006517789.4XP_006517852.1  ankyrin repeat domain-containing protein 55 isoform X1

    See identical proteins and their annotated locations for XP_006517852.1

    UniProtKB/Swiss-Prot
    Q8BLD6, Q9CTM6
    Conserved Domains (2) summary
    PHA03095
    Location:20314
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:92123
    ANK; ANK repeat [structural motif]
  3. XM_017315640.3XP_017171129.1  ankyrin repeat domain-containing protein 55 isoform X6

    Conserved Domains (2) summary
    PHA03095
    Location:20314
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:92123
    ANK; ANK repeat [structural motif]
  4. XM_036158222.1XP_036014115.1  ankyrin repeat domain-containing protein 55 isoform X2

    UniProtKB/TrEMBL
    E9Q0E9
    Conserved Domains (2) summary
    PHA03095
    Location:3286
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:6495
    ANK; ANK repeat [structural motif]
  5. XM_006517791.5XP_006517854.1  ankyrin repeat domain-containing protein 55 isoform X2

    See identical proteins and their annotated locations for XP_006517854.1

    UniProtKB/TrEMBL
    E9Q0E9
    Conserved Domains (2) summary
    PHA03095
    Location:3286
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:6495
    ANK; ANK repeat [structural motif]
  6. XM_017315639.3XP_017171128.1  ankyrin repeat domain-containing protein 55 isoform X2

    UniProtKB/TrEMBL
    E9Q0E9
    Conserved Domains (2) summary
    PHA03095
    Location:3286
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:6495
    ANK; ANK repeat [structural motif]
  7. XM_036158224.1XP_036014117.1  ankyrin repeat domain-containing protein 55 isoform X5

    Conserved Domains (2) summary
    sd00045
    Location:4576
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:4698
    Ank_4; Ankyrin repeats (many copies)
  8. XM_006517792.4XP_006517855.1  ankyrin repeat domain-containing protein 55 isoform X4

    Conserved Domains (2) summary
    sd00045
    Location:75106
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:76128
    Ank_4; Ankyrin repeats (many copies)