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Tmem200a transmembrane protein 200A [ Mus musculus (house mouse) ]

Gene ID: 77220, updated on 2-Nov-2024

Summary

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Official Symbol
Tmem200aprovided by MGI
Official Full Name
transmembrane protein 200Aprovided by MGI
Primary source
MGI:MGI:1924470
See related
Ensembl:ENSMUSG00000049420 AllianceGenome:MGI:1924470
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C030003D03Rik
Summary
Predicted to be located in membrane. Orthologous to human TMEM200A (transmembrane protein 200A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in adrenal adult (RPKM 8.0), whole brain E14.5 (RPKM 4.2) and 13 other tissues See more
Orthologs
human all
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Genomic context

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See Tmem200a in Genome Data Viewer
Location:
10 A4; 10 13.03 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (25867080..25955713, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (25991182..26079209, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930401C15 gene Neighboring gene nucleoporin 88 pseudogene Neighboring gene high mobility group box 2 pseudogene Neighboring gene ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog pseudogene Neighboring gene STARR-seq mESC enhancer starr_26112 Neighboring gene STARR-seq mESC enhancer starr_26113 Neighboring gene STARR-seq mESC enhancer starr_26116 Neighboring gene STARR-seq mESC enhancer starr_26117 Neighboring gene STARR-seq mESC enhancer starr_26119 Neighboring gene predicted gene 9767 Neighboring gene high mobility group box 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_26120 Neighboring gene STARR-seq mESC enhancer starr_26121 Neighboring gene sterile alpha motif domain containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Cell-type-specific consequences of Reelin deficiency in the mouse neocortex, hippocampus, and amygdala. Boyle MP, et al. J Comp Neurol, 2011 Aug 1. PMID 21491433
  2. Three-dimensional molecular architecture of mouse organogenesis. Qu F, et al. Nat Commun, 2023 Jul 31. PMID 37524711, Free PMC Article
  3. Identification of new ciliary signaling pathways in the brain and insights into neurological disorders. Loukil A, et al. bioRxiv, 2023 Dec 21. PMID 38187761, Free PMC Article
  4. Prediction of the coding sequences of mouse homologues of KIAA gene: IV. The complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, et al. DNA Res, 2004 Jun 30. PMID 15368895
  5. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 200A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358814.1 → NP_001345743.1  transmembrane protein 200A

    Status: VALIDATED

    Source sequence(s)
    AI482494, AK048673
    Consensus CDS
    CCDS23755.1
    UniProtKB/Swiss-Prot
    Q69Z67, Q8C817, Q8CCL5
    UniProtKB/TrEMBL
    B2RUN2
    Related
    ENSMUSP00000151861.2, ENSMUST00000218232.2
    Conserved Domains (1) summary
    pfam10177
    Location:16 → 161
    DUF2371; Uncharacterized conserved protein (DUF2371)

  2. NM_029881.4 → NP_084157.2  transmembrane protein 200A

    See identical proteins and their annotated locations for NP_084157.2

    Status: VALIDATED

    Source sequence(s)
    AI482494, AK173299
    Consensus CDS
    CCDS23755.1
    UniProtKB/Swiss-Prot
    Q69Z67, Q8C817, Q8CCL5
    UniProtKB/TrEMBL
    B2RUN2
    Related
    ENSMUSP00000064080.7, ENSMUST00000066049.7
    Conserved Domains (1) summary
    pfam10177
    Location:16 → 161
    DUF2371; Uncharacterized conserved protein (DUF2371)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    25867080..25955713 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036156087.1 → XP_036011980.1  transmembrane protein 200A isoform X1

    Conserved Domains (1) summary
    pfam10177
    Location:23 → 168
    DUF2371; Uncharacterized conserved protein (DUF2371)

  2. XM_017314147.3 → XP_017169636.1  transmembrane protein 200A isoform X1

    Conserved Domains (1) summary
    pfam10177
    Location:23 → 168
    DUF2371; Uncharacterized conserved protein (DUF2371)

  3. XM_036156088.1 → XP_036011981.1  transmembrane protein 200A isoform X2

    UniProtKB/Swiss-Prot
    Q69Z67, Q8C817, Q8CCL5
    UniProtKB/TrEMBL
    B2RUN2
    Conserved Domains (1) summary
    pfam10177
    Location:16 → 161
    DUF2371; Uncharacterized conserved protein (DUF2371)

  4. XM_006512920.3 → XP_006512983.1  transmembrane protein 200A isoform X2

    See identical proteins and their annotated locations for XP_006512983.1

    UniProtKB/Swiss-Prot
    Q69Z67, Q8C817, Q8CCL5
    UniProtKB/TrEMBL
    B2RUN2
    Conserved Domains (1) summary
    pfam10177
    Location:16 → 161
    DUF2371; Uncharacterized conserved protein (DUF2371)

  5. XM_006512921.5 → XP_006512984.1  transmembrane protein 200A isoform X2

    See identical proteins and their annotated locations for XP_006512984.1

    UniProtKB/Swiss-Prot
    Q69Z67, Q8C817, Q8CCL5
    UniProtKB/TrEMBL
    B2RUN2
    Conserved Domains (1) summary
    pfam10177
    Location:16 → 161
    DUF2371; Uncharacterized conserved protein (DUF2371)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8C817.1 GenPept UniProtKB/Swiss-Prot:Q8C817

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