U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Gpbp1l1 GC-rich promoter binding protein 1-like 1 [ Mus musculus (house mouse) ]

Gene ID: 77110, updated on 4-Dec-2022

Summary

Official Symbol
Gpbp1l1provided by MGI
Official Full Name
GC-rich promoter binding protein 1-like 1provided by MGI
Primary source
MGI:MGI:1924360
See related
Ensembl:ENSMUSG00000034042 AllianceGenome:MGI:1924360
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5330440M15Rik
Summary
Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human GPBP1L1 (GC-rich promoter binding protein 1 like 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in large intestine adult (RPKM 15.8), thymus adult (RPKM 14.8) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Gpbp1l1 in Genome Data Viewer
Location:
4; 4 D1
Exon count:
14
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (116414357..116451099)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (116557179..116593902)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene IAP promoted placental gene Neighboring gene transmembrane protein 69 Neighboring gene RIKEN cDNA C530005A16 gene Neighboring gene coiled-coil domain containing 17 Neighboring gene nuclear autoantigenic sperm protein (histone-binding)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC8183

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368177.1NP_001355106.1  vasculin-like protein 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AK077148, AL669953, BC066034
    Consensus CDS
    CCDS18511.1
    UniProtKB/Swiss-Prot
    Q9CTV6
    Related
    ENSMUSP00000102083.2, ENSMUST00000106475.2
    Conserved Domains (1) summary
    pfam15337
    Location:379449
    Vasculin; Vascular protein family Vasculin-like 1
  2. NM_029868.4NP_084144.2  vasculin-like protein 1

    See identical proteins and their annotated locations for NP_084144.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AL669953
    Consensus CDS
    CCDS18511.1
    UniProtKB/Swiss-Prot
    Q6NZP2, Q9CTV6
    Related
    ENSMUSP00000030460.9, ENSMUST00000030460.15
    Conserved Domains (1) summary
    pfam15337
    Location:379449
    Vasculin; Vascular protein family Vasculin-like 1

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    116414357..116451099
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017320452.3XP_017175941.1  vasculin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q6NZP2, Q9CTV6
    Conserved Domains (1) summary
    pfam15337
    Location:379449
    Vasculin; Vascular protein family Vasculin-like 1
  2. XM_006503485.5XP_006503548.1  vasculin-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006503548.1

    UniProtKB/Swiss-Prot
    Q6NZP2, Q9CTV6
    Conserved Domains (1) summary
    pfam15337
    Location:379449
    Vasculin; Vascular protein family Vasculin-like 1