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GPBP1L1 GC-rich promoter binding protein 1 like 1 [ Homo sapiens (human) ]

Gene ID: 60313, updated on 21-Dec-2019

Summary

Official Symbol
GPBP1L1provided by HGNC
Official Full Name
GC-rich promoter binding protein 1 like 1provided by HGNC
Primary source
HGNC:HGNC:28843
See related
Ensembl:ENSG00000159592
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SP192
Expression
Ubiquitous expression in testis (RPKM 44.4), thyroid (RPKM 35.1) and 25 other tissues See more
Orthologs

Genomic context

See GPBP1L1 in Genome Data Viewer
Location:
1p34.1
Exon count:
15
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (45627304..45688110, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (46092976..46153782, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene nuclear autoantigenic sperm protein Neighboring gene coiled-coil domain containing 17 Neighboring gene ribosomal protein S15a pseudogene 10 Neighboring gene ribosomal protein L7a pseudogene 16 Neighboring gene transmembrane protein 69 Neighboring gene intracisternal A particle-promoted polypeptide Neighboring gene uncharacterized LOC105378693

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
positive regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_021639.5NP_067652.1  vasculin-like protein 1

    See identical proteins and their annotated locations for NP_067652.1

    Status: VALIDATED

    Source sequence(s)
    BC022218, BC068578, BU627076
    Consensus CDS
    CCDS528.1
    UniProtKB/Swiss-Prot
    Q9HC44
    Related
    ENSP00000347224.3, ENST00000355105.8
    Conserved Domains (1) summary
    pfam15337
    Location:380459
    Vasculin; Vascular protein family Vasculin-like 1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    45627304..45688110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024448810.1XP_024304578.1  vasculin-like protein 1 isoform X1

    Conserved Domains (1) summary
    pfam15337
    Location:380459
    Vasculin; Vascular protein family Vasculin-like 1
  2. XM_024448808.1XP_024304576.1  vasculin-like protein 1 isoform X1

    Conserved Domains (1) summary
    pfam15337
    Location:380459
    Vasculin; Vascular protein family Vasculin-like 1
  3. XM_024448806.1XP_024304574.1  vasculin-like protein 1 isoform X1

    Conserved Domains (1) summary
    pfam15337
    Location:380459
    Vasculin; Vascular protein family Vasculin-like 1
  4. XM_024448809.1XP_024304577.1  vasculin-like protein 1 isoform X1

    Related
    ENSP00000290795.3, ENST00000290795.7
    Conserved Domains (1) summary
    pfam15337
    Location:380459
    Vasculin; Vascular protein family Vasculin-like 1
  5. XM_017002019.2XP_016857508.1  vasculin-like protein 1 isoform X2

RNA

  1. XR_002957285.1 RNA Sequence

  2. XR_001737358.2 RNA Sequence

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