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GPBP1L1 GC-rich promoter binding protein 1 like 1 [ Homo sapiens (human) ]

Gene ID: 60313, updated on 4-Dec-2022

Summary

Official Symbol
GPBP1L1provided by HGNC
Official Full Name
GC-rich promoter binding protein 1 like 1provided by HGNC
Primary source
HGNC:HGNC:28843
See related
Ensembl:ENSG00000159592 AllianceGenome:HGNC:28843
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SP192
Summary
Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis (RPKM 44.4), thyroid (RPKM 35.1) and 25 other tissues See more
Orthologs
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Genomic context

See GPBP1L1 in Genome Data Viewer
Location:
1p34.1
Exon count:
15
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (45627304..45688110, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (45499652..45558879, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (46092976..46152205, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene nuclear autoantigenic sperm protein Neighboring gene coiled-coil domain containing 17 Neighboring gene ribosomal protein S15a pseudogene 10 Neighboring gene ribosomal protein L7a pseudogene 16 Neighboring gene Sharpr-MPRA regulatory region 13545 Neighboring gene transmembrane protein 69 Neighboring gene intracisternal A particle-promoted polypeptide Neighboring gene uncharacterized LOC105378693

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_021639.5NP_067652.1  vasculin-like protein 1

    See identical proteins and their annotated locations for NP_067652.1

    Status: VALIDATED

    Source sequence(s)
    BC022218, BC068578, BU627076
    Consensus CDS
    CCDS528.1
    UniProtKB/Swiss-Prot
    Q9H751, Q9HC44
    Related
    ENSP00000347224.3, ENST00000355105.8
    Conserved Domains (1) summary
    pfam15337
    Location:380459
    Vasculin; Vascular protein family Vasculin-like 1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    45627304..45688110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047427077.1XP_047283033.1  vasculin-like protein 1 isoform X2

  2. XM_024448810.2XP_024304578.1  vasculin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9H751
    Conserved Domains (1) summary
    pfam15337
    Location:380459
    Vasculin; Vascular protein family Vasculin-like 1
  3. XM_047427059.1XP_047283015.1  vasculin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9H751
  4. XM_047427066.1XP_047283022.1  vasculin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9H751
  5. XM_047427070.1XP_047283026.1  vasculin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9H751
  6. XM_047427067.1XP_047283023.1  vasculin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9H751
  7. XM_047427069.1XP_047283025.1  vasculin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9H751
  8. XM_024448808.2XP_024304576.1  vasculin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9H751
    Conserved Domains (1) summary
    pfam15337
    Location:380459
    Vasculin; Vascular protein family Vasculin-like 1
  9. XM_047427075.1XP_047283031.1  vasculin-like protein 1 isoform X2

  10. XM_024448806.2XP_024304574.1  vasculin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9H751
    Conserved Domains (1) summary
    pfam15337
    Location:380459
    Vasculin; Vascular protein family Vasculin-like 1
  11. XM_047427076.1XP_047283032.1  vasculin-like protein 1 isoform X2

  12. XM_024448809.2XP_024304577.1  vasculin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9H751
    Related
    ENSP00000290795.3, ENST00000290795.7
    Conserved Domains (1) summary
    pfam15337
    Location:380459
    Vasculin; Vascular protein family Vasculin-like 1
  13. XM_017002019.3XP_016857508.1  vasculin-like protein 1 isoform X2

  14. XM_047427078.1XP_047283034.1  vasculin-like protein 1 isoform X3

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    45499652..45558879 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)