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ARFIP1 ADP ribosylation factor interacting protein 1 [ Gallus gallus (chicken) ]

Gene ID: 770884, updated on 17-Aug-2024

Summary

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Symbol
ARFIP1provided by CGNC
Full Name
ADP ribosylation factor interacting protein 1provided by CGNC
Primary source
CGNC:7678
See related
Ensembl:ENSGALG00010007663
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (33463483..33504256)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (33415716..33456387)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene F-box and WD repeat domain containing 7 Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC107051774 Neighboring gene transmembrane protein 154 Neighboring gene FH2 domain containing 1 Neighboring gene sodium channel and clathrin linker 1 Neighboring gene C4orf33 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in trans-Golgi network membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arfaptin-1
Names
arfaptin 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001252398.2 → NP_001239327.1  arfaptin-1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000073
    UniProtKB/TrEMBL
    A0A1D5P997, A0A8V0XVL0
    Conserved Domains (1) summary
    cd07660
    Location:184 → 384
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    33463483..33504256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046940328.1 → XP_046796284.1  arfaptin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XVL0

  2. XM_046940329.1 → XP_046796285.1  arfaptin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XVL0

  3. XM_046940334.1 → XP_046796290.1  arfaptin-1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0XVL0, A0A8V0XYB3
    Related
    ENSGALP00010010030.1, ENSGALT00010018253.1

  4. XM_046940336.1 → XP_046796292.1  arfaptin-1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0XVL0

  5. XM_046940332.1 → XP_046796288.1  arfaptin-1 isoform X3

    UniProtKB/TrEMBL
    A0A1D5P997, A0A8V0XVL0

  6. XM_046940335.1 → XP_046796291.1  arfaptin-1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0XVL0

  7. XM_046940338.1 → XP_046796294.1  arfaptin-1 isoform X8

    UniProtKB/TrEMBL
    A0A8V0XVL0

  8. XM_046940330.1 → XP_046796286.1  arfaptin-1 isoform X3

    UniProtKB/TrEMBL
    A0A1D5P997, A0A8V0XVL0

  9. XM_046940331.1 → XP_046796287.1  arfaptin-1 isoform X3

    UniProtKB/TrEMBL
    A0A1D5P997, A0A8V0XVL0
    Related
    ENSGALP00010010031.1, ENSGALT00010018254.1

  10. XM_046940333.1 → XP_046796289.1  arfaptin-1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XPB5, A0A8V0XVL0
    Related
    ENSGALP00010010032.1, ENSGALT00010018255.1

  11. XM_046940337.1 → XP_046796293.1  arfaptin-1 isoform X7

    UniProtKB/TrEMBL
    A0A8V0XVL0

  12. XM_015276329.4 → XP_015131815.1  arfaptin-1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0XVL0
    Conserved Domains (1) summary
    cd07660
    Location:155 → 355
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  13. XM_040699108.2 → XP_040555042.1  arfaptin-1 isoform X8

    UniProtKB/TrEMBL
    A0A8V0XVL0
    Conserved Domains (1) summary
    cd07660
    Location:147 → 347
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  14. XM_040699109.2 → XP_040555043.1  arfaptin-1 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XVL0
    Related
    ENSGALP00010010029.1, ENSGALT00010018252.1
    Conserved Domains (1) summary
    cd07660
    Location:123 → 323
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    33415716..33456387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046916543.1 → XP_046772499.1  arfaptin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XVL0

  2. XM_046916544.1 → XP_046772500.1  arfaptin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XVL0

  3. XM_046916549.1 → XP_046772505.1  arfaptin-1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0XVL0

  4. XM_046916552.1 → XP_046772508.1  arfaptin-1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0XVL0

  5. XM_046916547.1 → XP_046772503.1  arfaptin-1 isoform X3

    UniProtKB/TrEMBL
    A0A1D5P997, A0A8V0XVL0

  6. XM_046916551.1 → XP_046772507.1  arfaptin-1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0XVL0

  7. XM_046916555.1 → XP_046772511.1  arfaptin-1 isoform X8

    UniProtKB/TrEMBL
    A0A8V0XVL0

  8. XM_046916545.1 → XP_046772501.1  arfaptin-1 isoform X3

    UniProtKB/TrEMBL
    A0A1D5P997, A0A8V0XVL0

  9. XM_046916546.1 → XP_046772502.1  arfaptin-1 isoform X3

    UniProtKB/TrEMBL
    A0A1D5P997, A0A8V0XVL0

  10. XM_046916548.1 → XP_046772504.1  arfaptin-1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XPB5, A0A8V0XVL0

  11. XM_046916553.1 → XP_046772509.1  arfaptin-1 isoform X7

    UniProtKB/TrEMBL
    A0A8V0XVL0

  12. XM_046916550.1 → XP_046772506.1  arfaptin-1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0XVL0

  13. XM_046916554.1 → XP_046772510.1  arfaptin-1 isoform X8

    UniProtKB/TrEMBL
    A0A8V0XVL0

  14. XM_046916556.1 → XP_046772512.1  arfaptin-1 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XVL0
Nucleotide Protein Strain
Heading Accession and Version

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