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Rps9 ribosomal protein S9 [ Mus musculus (house mouse) ]

Gene ID: 76846, updated on 5-Feb-2023

Summary

Official Symbol
Rps9provided by MGI
Official Full Name
ribosomal protein S9provided by MGI
Primary source
MGI:MGI:1924096
See related
Ensembl:ENSMUSG00000006333 AllianceGenome:MGI:1924096
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
3010033P07Rik
Summary
Predicted to enable rRNA binding activity and translation regulator activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in positive regulation of cell population proliferation; positive regulation of translational fidelity; and translation. Is active in synapse. Is expressed in several structures, including cerebral cortex; diaphragm; eye; genitourinary system; and soleus. Orthologous to human RPS9 (ribosomal protein S9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 388.6), liver E14 (RPKM 316.7) and 28 other tissues See more
Orthologs
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Genomic context

See Rps9 in Genome Data Viewer
Location:
7; 7 A1
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (3706925..3709898)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (3703954..3706897)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene leukocyte receptor cluster (LRC) member 1 Neighboring gene transmembrane channel-like gene family 4 Neighboring gene membrane bound O-acyltransferase domain containing 7 Neighboring gene tRNA splicing endonuclease subunit 34 Neighboring gene paired Ig-like receptor B Neighboring gene paired-Ig-like receptor A1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC4138

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables 5.8S rRNA binding ISO
Inferred from Sequence Orthology
more info
 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables rRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
enables translation regulator activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in cytoplasmic translation NAS
Non-traceable Author Statement
more info
PubMed 
involved_in positive regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in ribosomal small subunit biogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in translation ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm NAS
Non-traceable Author Statement
more info
PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in cytosolic ribosome ISO
Inferred from Sequence Orthology
more info
 
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
part_of cytosolic small ribosomal subunit NAS
Non-traceable Author Statement
more info
PubMed 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
is_active_in postsynapse NAS
Non-traceable Author Statement
more info
PubMed 
part_of ribonucleoprotein complex ISO
Inferred from Sequence Orthology
more info
 
is_active_in ribosome NAS
Non-traceable Author Statement
more info
PubMed 
part_of small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 
is_active_in synapse EXP
Inferred from Experiment
more info
PubMed 
is_active_in synapse IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029767.2NP_084043.1  40S ribosomal protein S9

    See identical proteins and their annotated locations for NP_084043.1

    Status: PROVISIONAL

    Source sequence(s)
    AK050591
    Consensus CDS
    CCDS20726.1
    UniProtKB/Swiss-Prot
    Q6ZWN5, Q8K2D1
    UniProtKB/TrEMBL
    A0A6P5Q1F2, A0A8C6GM70
    Related
    ENSMUSP00000006496.9, ENSMUST00000006496.15
    Conserved Domains (1) summary
    PTZ00155
    Location:11177
    PTZ00155; 40S ribosomal protein S9; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    3706925..3709898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_391108.5 RNA Sequence

    Related
    ENSMUST00000146927.2