U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Rpl18a ribosomal protein L18A [ Mus musculus (house mouse) ]

Gene ID: 76808, updated on 8-Jan-2023

Summary

Official Symbol
Rpl18aprovided by MGI
Official Full Name
ribosomal protein L18Aprovided by MGI
Primary source
MGI:MGI:1924058
See related
Ensembl:ENSMUSG00000045128 AllianceGenome:MGI:1924058
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2510019J09Rik
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Is active in postsynaptic density. Orthologous to human RPL18A (ribosomal protein L18a). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in ovary adult (RPKM 831.5), spleen adult (RPKM 769.9) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Rpl18a in Genome Data Viewer
Location:
8; 8 B3.3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (71347366..71350087, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (70894722..70897443, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 124 Neighboring gene solute carrier family 5 (sodium iodide symporter), member 5 Neighboring gene microRNA 7067 Neighboring gene small nucleolar RNA, H/ACA box 68 Neighboring gene microtubule-associated protein 1S Neighboring gene microRNA 1969

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in cytoplasmic translation ISO
Inferred from Sequence Orthology
more info
 
involved_in cytoplasmic translation NAS
Non-traceable Author Statement
more info
PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm NAS
Non-traceable Author Statement
more info
PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
 
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of cytosolic large ribosomal subunit IPI
Inferred from Physical Interaction
more info
PubMed 
part_of cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
located_in cytosolic ribosome ISO
Inferred from Sequence Orthology
more info
 
located_in polysomal ribosome ISO
Inferred from Sequence Orthology
more info
 
is_active_in postsynaptic density EXP
Inferred from Experiment
more info
PubMed 
is_active_in postsynaptic density IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in postsynaptic density ISO
Inferred from Sequence Orthology
more info
 
located_in ribosome ISO
Inferred from Sequence Orthology
more info
 
is_active_in synapse ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029751.4NP_084027.1  60S ribosomal protein L18a

    See identical proteins and their annotated locations for NP_084027.1

    Status: VALIDATED

    Source sequence(s)
    AK161942, CJ042325
    Consensus CDS
    CCDS22386.1
    UniProtKB/Swiss-Prot
    P62717, Q3TSN0
    UniProtKB/TrEMBL
    A0A6P5Q2T4, A0A8C6IL36
    Related
    ENSMUSP00000058368.9, ENSMUST00000054220.10
    Conserved Domains (1) summary
    COG2157
    Location:69153
    RPL20A; Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    71347366..71350087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)