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Actrt3 actin related protein T3 [ Mus musculus (house mouse) ]

Gene ID: 76652, updated on 12-Aug-2019

Summary

Official Symbol
Actrt3provided by MGI
Official Full Name
actin related protein T3provided by MGI
Primary source
MGI:MGI:1923902
See related
Ensembl:ENSMUSG00000037737
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Arpm1; ARP-T3; 1700119I24Rik
Expression
Restricted expression toward testis adult (RPKM 19.8) See more
Orthologs

Genomic context

See Actrt3 in Genome Data Viewer
Location:
3; 3 A3
Exon count:
2
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (30597073..30599870, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (30495995..30498792, complement)

Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene MDS1 and EVI1 complex locus Neighboring gene uncharacterized LOC115489713 Neighboring gene predicted gene 10258 Neighboring gene nuclear encoded tRNA valine 8 (anticodon AAC) Neighboring gene myoneurin

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Homology

Clone Names

  • MGC130225

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
actin cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
male germ cell nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
actin-related protein T3
Names
actin related protein M1
actin-related protein M1 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029690.2NP_083966.1  actin-related protein T3

    See identical proteins and their annotated locations for NP_083966.1

    Status: PROVISIONAL

    Source sequence(s)
    AK047260
    Consensus CDS
    CCDS17283.1
    UniProtKB/Swiss-Prot
    Q8BXF8
    Related
    ENSMUSP00000048360.6, ENSMUST00000047630.6
    Conserved Domains (2) summary
    smart00268
    Location:5369
    ACTIN; Actin
    cl17037
    Location:9369
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000069.6 Reference GRCm38.p6 C57BL/6J

    Range
    30597073..30599870 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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