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Cmtm2b CKLF-like MARVEL transmembrane domain containing 2B [ Mus musculus (house mouse) ]

Gene ID: 75502, updated on 31-Jan-2019

Summary

Official Symbol
Cmtm2bprovided by MGI
Official Full Name
CKLF-like MARVEL transmembrane domain containing 2Bprovided by MGI
Primary source
MGI:MGI:2447311
See related
Ensembl:ENSMUSG00000035785
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cklfsf22; Cklfsf2b; 1700013O04Rik
Expression
Restricted expression toward testis adult (RPKM 279.9) See more

Genomic context

See Cmtm2b in Genome Data Viewer
Location:
8; 8 D3
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (104322204..104330764)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (106846137..106854656)

Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene CKLF-like MARVEL transmembrane domain containing 2A Neighboring gene CKLF-like MARVEL transmembrane domain containing 1 Neighboring gene CKLF-like MARVEL transmembrane domain containing 3 Neighboring gene CKLF-like MARVEL transmembrane domain containing 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
cytokine activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
chemotaxis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
extracellular space IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
CKLF-like MARVEL transmembrane domain-containing protein 2B
Names
chemokine-like factor super family 2B
chemokine-like factor superfamily member 2B
chemokine-like factor superfamily protein 2-2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028524.3NP_082800.1  CKLF-like MARVEL transmembrane domain-containing protein 2B

    See identical proteins and their annotated locations for NP_082800.1

    Status: VALIDATED

    Source sequence(s)
    AC121952, AK005970, BC050983
    Consensus CDS
    CCDS22576.1
    UniProtKB/Swiss-Prot
    Q9DAC0
    Related
    ENSMUSP00000043127.5, ENSMUST00000041973.6
    Conserved Domains (1) summary
    pfam01284
    Location:35120
    MARVEL; Membrane-associating domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

    Range
    104322204..104330764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006531455.3XP_006531518.1  CKLF-like MARVEL transmembrane domain-containing protein 2B isoform X1

    Conserved Domains (1) summary
    cl04571
    Location:35120
    MARVEL; Membrane-associating domain
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