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RORA RAR related orphan receptor A [ Pan troglodytes (chimpanzee) ]

Gene ID: 747433, updated on 2-Nov-2023

Summary

Official Symbol
RORAprovided by VGNC
Official Full Name
RAR related orphan receptor Aprovided by VGNC
Primary source
VGNC:VGNC:7524
Locus tag
CK820_G0008386
See related
Ensembl:ENSPTRG00000052707
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See RORA in Genome Data Viewer
Location:
chromosome: 15
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_04 current NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 15 NC_072413.1 (52477927..53209656, complement)

Chromosome 15 - NC_072413.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S10-like Neighboring gene uncharacterized LOC107968493 Neighboring gene interactor of little elongation complex ELL subunit 2 Neighboring gene uncharacterized LOC107968498 Neighboring gene uncharacterized LOC107968495 Neighboring gene uncharacterized LOC107968496 Neighboring gene uncharacterized LOC107968497 Neighboring gene uncharacterized LOC112205550 Neighboring gene serine/arginine repetitive matrix protein 1-like Neighboring gene vacuolar protein sorting 13 homolog C Neighboring gene nucleophosmin-like Neighboring gene C2 calcium dependent domain containing 4A

Genomic regions, transcripts, and products

Genomic Sequence:
NC_072413.1 Chromosome 15 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in negative regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Genomic

  1. NC_072413.1 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

    Range
    52477927..53209656 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001173408.6XP_001173408.1  nuclear receptor ROR-alpha isoform X2

    See identical proteins and their annotated locations for XP_001173408.1

    UniProtKB/TrEMBL
    A0A2I3RNV8, A0A2I3RQ08, A0A2J8NRZ3, A0A6D2X5Y8
    Related
    ENSPTRP00000066023.1
    Conserved Domains (2) summary
    cd06939
    Location:272511
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:66160
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
  2. XM_054667625.1XP_054523600.1  nuclear receptor ROR-alpha isoform X1

    UniProtKB/TrEMBL
    A0A2I3RQ08
  3. XM_016927663.3XP_016783152.1  nuclear receptor ROR-alpha isoform X3

    UniProtKB/TrEMBL
    A0A2I3RQ08, A0A2J8NRY3, A0A6D2XII6, K7BIT0
    Related
    ENSPTRP00000081573.1
    Conserved Domains (2) summary
    cd06939
    Location:217456
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:11105
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers