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RORA RAR related orphan receptor A [ Pan troglodytes (chimpanzee) ]

Gene ID: 747433, updated on 10-Oct-2024

Summary

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Official Symbol
RORAprovided by VGNC
Official Full Name
RAR related orphan receptor Aprovided by VGNC
Primary source
VGNC:VGNC:7524
Locus tag
CK820_G0008386
See related
Ensembl:ENSPTRG00000052707
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See RORA in Genome Data Viewer
Location:
chromosome: 16
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 16 NC_072414.2 (52499461..53234776, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 15 NC_072413.1 (52477927..53209656, complement)

Chromosome 16 - NC_072414.2Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS10-like Neighboring gene uncharacterized LOC107968493 Neighboring gene uncharacterized LOC134808542 Neighboring gene interactor of little elongation complex ELL subunit 2 Neighboring gene uncharacterized LOC107968498 Neighboring gene uncharacterized LOC134808541 Neighboring gene uncharacterized LOC134808540 Neighboring gene uncharacterized LOC107968495 Neighboring gene uncharacterized LOC107968496 Neighboring gene uncharacterized LOC112205550 Neighboring gene serine/arginine repetitive matrix protein 1-like Neighboring gene vacuolar protein sorting 13 homolog C Neighboring gene uncharacterized LOC134808452 Neighboring gene C2 calcium dependent domain containing 4A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxysterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor ROR-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072414.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    52499461..53234776 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016927663.4 → XP_016783152.2  nuclear receptor ROR-alpha isoform X6

  2. XM_063795105.1 → XP_063651175.1  nuclear receptor ROR-alpha isoform X4

  3. XM_063795106.1 → XP_063651176.1  nuclear receptor ROR-alpha isoform X5

  4. XM_063795103.1 → XP_063651173.1  nuclear receptor ROR-alpha isoform X1

  5. XM_001173408.7 → XP_001173408.1  nuclear receptor ROR-alpha isoform X3

    See identical proteins and their annotated locations for XP_001173408.1

    UniProtKB/TrEMBL
    A0A2I3RNV8, A0A2I3RQ08, A0A2J8NRZ3, A0A6D2X5Y8
    Related
    ENSPTRP00000066023.1
    Conserved Domains (2) summary
    cd06939
    Location:272 → 511
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:66 → 160
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

  6. XM_054667625.2 → XP_054523600.1  nuclear receptor ROR-alpha isoform X2

RNA

  1. XR_010151721.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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