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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001289916.1 → NP_001276845.1 nuclear receptor ROR-alpha isoform 2
See identical proteins and their annotated locations for NP_001276845.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) has an alternate exon in place of the first two exons compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AK155827, CT009708, Y08640
- Consensus CDS
-
CCDS72268.1
- UniProtKB/Swiss-Prot
-
P51448
- UniProtKB/TrEMBL
-
Q3U1P4
- Related
- ENSMUSP00000109254.3, ENSMUST00000113624.3
- Conserved Domains (2) summary
-
- cd06939
Location:216 → 455
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cd06968
Location:10 → 104
- NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
-
NM_001289917.1 → NP_001276846.1 nuclear receptor ROR-alpha isoform 3
See identical proteins and their annotated locations for NP_001276846.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 3' UTR and coding sequence and shares only the first exon compared to variant 1. The resulting isoform (3) has a shorter and distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AC155931, AK086033
- UniProtKB/TrEMBL
-
Q8C3F5
- Related
-
ENSMUST00000140351.8
-
NM_013646.2 → NP_038674.1 nuclear receptor ROR-alpha isoform 1
See identical proteins and their annotated locations for NP_038674.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AK086033, CT009708, U53228
- Consensus CDS
-
CCDS23314.1
- UniProtKB/Swiss-Prot
- P51448, P70283, P97741, P97773, Q923G1
- UniProtKB/TrEMBL
-
Q8C3F5
- Related
- ENSMUSP00000034766.7, ENSMUST00000034766.14
- Conserved Domains (2) summary
-
- cd06939
Location:272 → 511
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cd06968
Location:66 → 160
- NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000075.7 Reference GRCm39 C57BL/6J
- Range
-
68560627..69295528
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036154733.1 → XP_036010626.1 nuclear receptor ROR-alpha isoform X1
- Conserved Domains (2) summary
-
- cd06939
Location:272 → 510
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cd06968
Location:66 → 160
- NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
-
XM_030244146.2 → XP_030100006.1 nuclear receptor ROR-alpha isoform X6
- UniProtKB/TrEMBL
-
Q8BRL5
- Conserved Domains (2) summary
-
- cd06939
Location:135 → 374
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cl02596
Location:1 → 23
- NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
-
XM_011242682.4 → XP_011240984.1 nuclear receptor ROR-alpha isoform X8
-
XM_006510880.2 → XP_006510943.1 nuclear receptor ROR-alpha isoform X5
- Conserved Domains (2) summary
-
- cd06939
Location:208 → 447
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cd06968
Location:2 → 96
- NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
-
XM_006510878.4 → XP_006510941.1 nuclear receptor ROR-alpha isoform X3
- Conserved Domains (2) summary
-
- cd06939
Location:224 → 463
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cd06968
Location:18 → 112
- NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
-
XM_036154734.1 → XP_036010627.1 nuclear receptor ROR-alpha isoform X4
- Conserved Domains (2) summary
-
- cd06939
Location:216 → 454
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cd06968
Location:10 → 104
- NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
-
XM_030244147.2 → XP_030100007.1 nuclear receptor ROR-alpha isoform X6
- UniProtKB/TrEMBL
-
Q8BRL5
- Conserved Domains (2) summary
-
- cd06939
Location:135 → 374
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cl02596
Location:1 → 23
- NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
-
XM_036154737.1 → XP_036010630.1 nuclear receptor ROR-alpha isoform X7
- UniProtKB/TrEMBL
-
Q8BRL5
- Conserved Domains (2) summary
-
- cd06939
Location:135 → 373
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cl02596
Location:1 → 23
- NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
-
XM_036154736.1 → XP_036010629.1 nuclear receptor ROR-alpha isoform X6
- UniProtKB/TrEMBL
-
Q8BRL5
- Conserved Domains (2) summary
-
- cd06939
Location:135 → 374
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cl02596
Location:1 → 23
- NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
-
XM_006510877.5 → XP_006510940.1 nuclear receptor ROR-alpha isoform X2
- Conserved Domains (2) summary
-
- cd06939
Location:269 → 508
- NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
- cd06968
Location:63 → 157
- NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
RNA
-
XR_004935350.1 RNA Sequence