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Slc35a5 solute carrier family 35, member A5 [ Mus musculus (house mouse) ]

Gene ID: 74102, updated on 10-Oct-2019

Summary

Official Symbol
Slc35a5provided by MGI
Official Full Name
solute carrier family 35, member A5provided by MGI
Primary source
MGI:MGI:1921352
See related
Ensembl:ENSMUSG00000022664
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AU021179; BB097433; D16Ertd450e; 1010001J06Rik; D730043G07Rik
Expression
Ubiquitous expression in testis adult (RPKM 9.5), CNS E18 (RPKM 6.4) and 28 other tissues See more
Orthologs

Genomic context

See Slc35a5 in Genome Data Viewer
Location:
16 B5; 16 29.44 cM
Exon count:
8
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (45139573..45158673, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (45139686..45158786, complement)

Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene CD200 receptor 3 Neighboring gene coiled-coil domain containing 80 Neighboring gene autophagy related 3 Neighboring gene B and T lymphocyte associated

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
pyrimidine nucleotide-sugar transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
carbohydrate transport IEA
Inferred from Electronic Annotation
more info
 
pyrimidine nucleotide-sugar transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
probable UDP-sugar transporter protein SLC35A5

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356453.1NP_001343382.1  probable UDP-sugar transporter protein SLC35A5 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC129601
    Conserved Domains (1) summary
    pfam04142
    Location:30386
    Nuc_sug_transp; Nucleotide-sugar transporter
  2. NM_028756.4NP_083032.2  probable UDP-sugar transporter protein SLC35A5 isoform 1

    See identical proteins and their annotated locations for NP_083032.2

    Status: VALIDATED

    Source sequence(s)
    AK003124, AK033921, CJ075331
    Consensus CDS
    CCDS28193.1
    UniProtKB/Swiss-Prot
    Q921R7
    Related
    ENSMUSP00000023344.3, ENSMUST00000023344.9
    Conserved Domains (2) summary
    pfam04142
    Location:30387
    Nuc_sug_transp; Nucleotide-sugar transporter
    cl23754
    Location:228386
    EamA; EamA-like transporter family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000082.6 Reference GRCm38.p6 C57BL/6J

    Range
    45139573..45158673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006522647.4XP_006522710.1  probable UDP-sugar transporter protein SLC35A5 isoform X1

    Conserved Domains (2) summary
    pfam04142
    Location:46403
    Nuc_sug_transp; Nucleotide-sugar transporter
    cl23754
    Location:244402
    EamA; EamA-like transporter family
  2. XM_006522648.4XP_006522711.1  probable UDP-sugar transporter protein SLC35A5 isoform X2

    Conserved Domains (2) summary
    pfam04142
    Location:46402
    Nuc_sug_transp; Nucleotide-sugar transporter
    cl23754
    Location:243401
    EamA; EamA-like transporter family
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