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Slc35b2 solute carrier family 35, member B2 [ Mus musculus (house mouse) ]

Gene ID: 73836, updated on 8-Feb-2024

Summary

Official Symbol
Slc35b2provided by MGI
Official Full Name
solute carrier family 35, member B2provided by MGI
Primary source
MGI:MGI:1921086
See related
Ensembl:ENSMUSG00000037089 AllianceGenome:MGI:1921086
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
PAPST1; Slc35b1; 1110003M08Rik
Summary
Predicted to enable 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity. Predicted to be involved in 3'-phosphoadenosine 5'-phosphosulfate transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane and integral component of endoplasmic reticulum membrane. Is expressed in several structures, including alimentary system; craniocervical region bone; otic capsule; retina nuclear layer; and shoulder bone. Orthologous to human SLC35B2 (solute carrier family 35 member B2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in ovary adult (RPKM 50.2), colon adult (RPKM 39.7) and 28 other tissues See more
Orthologs
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Genomic context

See Slc35b2 in Genome Data Viewer
Location:
17 B3; 17 22.59 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (45874844..45878597)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (45563913..45567671)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene t-complex-associated testis expressed 1 Neighboring gene transmembrane protein 151B Neighboring gene STARR-positive B cell enhancer ABC_E7533 Neighboring gene STARR-positive B cell enhancer ABC_E961 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:45695258-45695367 Neighboring gene nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon Neighboring gene STARR-positive B cell enhancer ABC_E10954 Neighboring gene heat shock protein 90 alpha (cytosolic), class B member 1 Neighboring gene STARR-positive B cell enhancer ABC_E9954 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:45710735-45710975 Neighboring gene predicted gene, 35399

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
is_active_in Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in Golgi membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in Golgi membrane ISO
Inferred from Sequence Orthology
more info
 
located_in membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
adenosine 3'-phospho 5'-phosphosulfate transporter 1
Names
PAPS transporter 1
solute carrier family 35, member B1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357105.1NP_001344034.1  adenosine 3'-phospho 5'-phosphosulfate transporter 1

    Status: VALIDATED

    Source sequence(s)
    AI842275, AK144403, AK152362, BB855705, BB871150
    Consensus CDS
    CCDS37630.2
    UniProtKB/Swiss-Prot
    Q3U221, Q8BTH2, Q91ZN5
    UniProtKB/TrEMBL
    Q3U399, Q3U866
    Related
    ENSMUSP00000153367.2, ENSMUST00000224905.2
    Conserved Domains (1) summary
    pfam08449
    Location:111412
    UAA; UAA transporter family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    45874844..45878597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036160806.1XP_036016699.1  adenosine 3'-phospho 5'-phosphosulfate transporter 1 isoform X1

    UniProtKB/TrEMBL
    Q3TJQ2
    Conserved Domains (1) summary
    pfam08449
    Location:31326
    UAA; UAA transporter family
  2. XM_036160807.1XP_036016700.1  adenosine 3'-phospho 5'-phosphosulfate transporter 1 isoform X2

    UniProtKB/TrEMBL
    Q3TJQ2
    Related
    ENSMUSP00000153631.2, ENSMUST00000223987.2
    Conserved Domains (1) summary
    pfam08449
    Location:106407
    UAA; UAA transporter family

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_028662.2: Suppressed sequence

    Description
    NM_028662.2: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.