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gpcpd1.L glycerophosphocholine phosphodiesterase 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 735213, updated on 18-Sep-2024

Summary

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Official Symbol
gpcpd1.L
Official Full Name
glycerophosphocholine phosphodiesterase 1 L homeolog
Primary source
Xenbase:XB-GENE-967389
Locus tag
XELAEV_18026076mg
See related
EnsemblRapid:ENSXLAG00005010356
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
gde5; gdpd6; prei4; gpcpd1
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Genomic context

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Location:
chromosome: 5L
Exon count:
22
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (2186040..2237745)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (1449058..1491516)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene tRNA methyltransferase 6 L homeolog Neighboring gene chromogranin B L homeolog Neighboring gene uncharacterized LOC121393594 Neighboring gene beta-soluble NSF attachment protein Neighboring gene GDNF inducible zinc finger protein 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC130994

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables glycerophosphocholine phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables starch binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
glycerophosphocholine phosphodiesterase 1 L homeolog
Names
glycerophosphocholine phosphodiesterase GDE1 homolog
rp5-1022p6.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096666.1 → NP_001090135.1  glycerophosphocholine phosphodiesterase 1 L homeolog

    See identical proteins and their annotated locations for NP_001090135.1

    Status: PROVISIONAL

    Source sequence(s)
    BC108538
    UniProtKB/TrEMBL
    A0A974CV36, Q32NP5
    Related
    ENSXLAP00005030541.1, ENSXLAT00005031298.1
    Conserved Domains (2) summary
    cd05814
    Location:7 → 127
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:324 → 615
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    2186040..2237745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041562339.1 → XP_041418273.1  glycerophosphocholine phosphodiesterase 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974CV36, Q32NP5
    Conserved Domains (2) summary
    cd05814
    Location:7 → 127
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:324 → 615
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

  2. XM_018262145.2 → XP_018117634.1  glycerophosphocholine phosphodiesterase 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974CV36, Q32NP5
    Conserved Domains (2) summary
    cd05814
    Location:7 → 127
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:324 → 615
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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