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ttc29.L tetratricopeptide repeat domain 29 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734899, updated on 18-Sep-2024

Summary

Official Symbol
ttc29.L
Official Full Name
tetratricopeptide repeat domain 29 L homeolog
Primary source
Xenbase:XB-GENE-992355
Locus tag
XELAEV_18005512mg
See related
EnsemblRapid:ENSXLAG00005004028
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ttc29
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Genomic context

Location:
chromosome: 1L
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (61375656..61519059)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (50950527..51094376)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene endothelin receptor type A L homeolog Neighboring gene protein RNA-directed DNA methylation 3-like Neighboring gene uncharacterized LOC121401131 Neighboring gene POU domain, class 4, transcription factor 2

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC130920

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cilium movement IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cilium movement ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in motile cilium IEA
Inferred from Electronic Annotation
more info
 
located_in sperm flagellum IEA
Inferred from Electronic Annotation
more info
 
located_in sperm flagellum ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
tetratricopeptide repeat protein 29
Names
TPR repeat protein 29

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096364.1NP_001089833.1  tetratricopeptide repeat protein 29

    See identical proteins and their annotated locations for NP_001089833.1

    Status: PROVISIONAL

    Source sequence(s)
    BC108516
    UniProtKB/Swiss-Prot
    Q32NR4
    UniProtKB/TrEMBL
    A0A974DYS4
    Related
    ENSXLAP00005012080.1, ENSXLAT00005012254.1
    Conserved Domains (2) summary
    sd00006
    Location:282315
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:322389
    TPR_11; TPR repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    61375656..61519059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)